Commits · 800ad4799b3c2f63d1f40216978f76a38ca8e614 · Mirrors / biopet.biopet

Jan 25, 2016
- Skipped flexiprep stats when flexiprep is not executed · 800ad479
  Peter van 't Hof authored 9 years ago
  
  800ad479
- Fixed bug in report · b2156b2c
  Peter van 't Hof authored 9 years ago
  
  b2156b2c
Jan 15, 2016
- Rename camel caps to underscore · 793a34eb
  bow authored 9 years ago
  
  793a34eb
- Unify output bam names · a3009b39
  bow authored 9 years ago
  
  a3009b39
Jan 12, 2016
- Style fixes · 9968c43a
  Peter van 't Hof authored 9 years ago
  
  9968c43a
- Added rna metrics plot · dd6189e2
  Peter van 't Hof authored 9 years ago
  
  dd6189e2
- Only show wgs if executed · b9f23956
  Peter van 't Hof authored 9 years ago
  
  b9f23956
- Fix reference tag · 81d36084
  Peter van 't Hof authored 9 years ago
  
  81d36084
- Fixed report types · 9034e179
  Peter van 't Hof authored 9 years ago
  
  9034e179
Jan 11, 2016
- Added front · be731b74
  Peter van 't Hof authored 9 years ago
  
  be731b74
- Switch shiva to general multisample report · b0f9d027
  Peter van 't Hof authored 9 years ago
  
  b0f9d027
- Added report to multisample mapping · b44d0a54
  Peter van 't Hof authored 9 years ago
  
  b44d0a54
- Move generic pages to multisamplemapping · aa8071f2
  Peter van 't Hof authored 9 years ago
  
  aa8071f2
- Style fix · 203a0c98
  Peter van 't Hof authored 9 years ago
  
  203a0c98
Jan 08, 2016
- Style changes · 96efe61e
  Peter van 't Hof authored 9 years ago
  
  96efe61e
- Fix output file for tophat step · e3fd97af
  Peter van 't Hof authored 9 years ago
  
  e3fd97af
- Fixed rna metrics · 565f3979
  Peter van 't Hof authored 9 years ago
  
  565f3979
Jan 06, 2016
- Fixed typo · fa4b60f8
  Peter van 't Hof authored 9 years ago
  
  fa4b60f8
- Moved summaryFile · 4143a145
  Peter van 't Hof authored 9 years ago
  
  4143a145
Jan 05, 2016
- Fix temp files in mapping · 748dd6c2
  Peter van 't Hof authored 9 years ago
  
  748dd6c2
Dec 29, 2015
- Move Bowtie2 to package bowtie · 76383bf1
  Peter van 't Hof authored 9 years ago
  
  76383bf1
Dec 28, 2015
- Added whitespace · 28a34d76
  Peter van 't Hof authored 9 years ago
  
  28a34d76
- Added md5 check · 4fd461e8
  Peter van 't Hof authored 9 years ago
  
  4fd461e8
- Fixed intermediate files · 330377f0
  Peter van 't Hof authored 9 years ago
  
  330377f0
- Fix format · 4078fca2
  Peter van 't Hof authored 9 years ago
  
  4078fca2
- Fixed output dir · f2c27a88
  Peter van 't Hof authored 9 years ago
  
  f2c27a88
- Fixed traits · 7accfa72
  Peter van 't Hof authored 9 years ago
  
  7accfa72
Dec 22, 2015
- Switch shiva to multisample mapping · b1e56b71
  Peter van 't Hof authored 9 years ago
  
  b1e56b71
Dec 21, 2015
- Added files to summary · 31a835a1
  Peter van 't Hof authored 9 years ago
  
  31a835a1
- Add bam linking · 7501f792
  Peter van 't Hof authored 9 years ago
  
  7501f792
- Adding merge strategies · 10d0ce96
  Peter van 't Hof authored 9 years ago
  
  10d0ce96
Dec 18, 2015
- Init setup for multisample mapping pipeline · a416a47b
  Peter van 't Hof authored 9 years ago
  
  a416a47b
- Change back to get · 7e542a61
  Peter van 't Hof authored 9 years ago
  
  7e542a61
- More fail safe · a6d7e825
  Peter van 't Hof authored 9 years ago
  
  a6d7e825
- Simplify · 8d9d194b
  Peter van 't Hof authored 9 years ago
  
  8d9d194b
Nov 26, 2015
- Fix bowtie2 readgroup · ac61c9dd
  Wai Yi Leung authored 9 years ago
  
  ac61c9dd
Nov 25, 2015
- Style reformat after compiling · cb684be5
  Wai Yi Leung authored 9 years ago
  
  cb684be5
- Add bowtie2 to Mapping (and add wrapper for bowtie2) · 6c3cd444
  Wai Yi Leung authored 9 years ago
  
  6c3cd444
Nov 24, 2015
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c