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biopet.biopet
Commits
be731b74
Commit
be731b74
authored
Jan 11, 2016
by
Peter van 't Hof
Browse files
Added front
parent
b0f9d027
Changes
2
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public/mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/multisampleMappingFront.ssp
0 → 100644
View file @
be731b74
#import(nl.lumc.sasc.biopet.utils.summary.Summary)
#import(nl.lumc.sasc.biopet.core.report.ReportPage)
<%@ var summary: Summary %>
<%@ var rootPath: String %>
<table class="table">
<tbody>
<tr><th>Pipeline</th><td>Shiva</td></tr>
<tr><th>Version</th><td>${summary.getValue("meta", "pipeline_version")}</td></tr>
<tr><th>Last commit hash</th><td>${summary.getValue("meta", "last_commit_hash")}</td></tr>
<tr><th>Output directory</th><td>${summary.getValue("meta", "output_dir")}</td></tr>
<tr><th>Reference</th><td>${summary.getValue("shiva", "settings", "reference", "species")} - ${summary.getValue("shiva", "settings", "reference", "name")}</td></tr>
<tr><th>Number of samples</th><td>${summary.samples.size}</td></tr>
</tbody>
</table>
<br/>
<div class="row">
<div class="col-md-1"></div>
<div class="col-md-6">
<p>
In this web document you can find your <em>Shiva</em> pipeline report.
Different categories of data can be found in the left-side menu.
Statistics per sample and library can be accessed through the top-level menu.
Some statistics for target regions can be found in the regions tab.
Futhermore, you can view all versions of software tools used by selecting <em>Versions</em> from the top menu.
</p>
<p>
<small>Brought to you by <a href="https://sasc.lumc.nl" target="_blank"><abbr
title="Sequence Analysis Support Core">SASC</abbr></a> and <a
href="https://www.lumc.nl/org/klinische-genetica/" target="_blank"><abbr title="Clinical Genetics LUMC">KG</abbr></a>,
LUMC.
</small>
</p>
</div>
</div>
\ No newline at end of file
public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingReport.scala
View file @
be731b74
...
...
@@ -18,9 +18,8 @@ object MultisampleMappingReport extends MultisampleMappingReportTrait {
}
trait
MultisampleMappingReportTrait
extends
MultisampleReportBuilder
{
//TODO: add front section
/** Front section for the report */
def
frontSection
:
ReportSection
=
???
def
frontSection
:
ReportSection
=
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/mapping/multisampleMappingFront.ssp"
)
/** Root page for the carp report */
def
indexPage
=
{
...
...
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