Commits · 6f6a76e70ee71c9fc9a83df4f511ae72ab0329c3 · Mirrors / biopet.biopet

Nov 23, 2015
- Added target variants to report · 6f6a76e7
  Peter van 't Hof authored 9 years ago
  
  6f6a76e7
- Added intermediate · 27813378
  Peter van 't Hof authored 9 years ago
  
  27813378
- Fixed nameprefix · 38402a6c
  Peter van 't Hof authored 9 years ago
  
  38402a6c
- Added tbi output file · ba626927
  Peter van 't Hof authored 9 years ago
  
  ba626927
- Added module to config value · 2c8b6f02
  Peter van 't Hof authored 9 years ago
  
  2c8b6f02
- Adding decompose option to shiva · 04f343cb
  Peter van 't Hof authored 9 years ago
  
  04f343cb
- Adding vt decompose extension · cf338a86
  Peter van 't Hof authored 9 years ago
  
  cf338a86
Nov 20, 2015
- Added normalize option to shiva · ac9315e7
  Peter van 't Hof authored 9 years ago
  
  ac9315e7
- Fixed args · 73088af2
  Peter van 't Hof authored 9 years ago
  
  73088af2
- Added vt normalizer extension · 241a7d23
  Peter van 't Hof authored 9 years ago
  
  241a7d23
- Fixed summary jobs for carp · 1568a600
  Peter van 't Hof authored 9 years ago
  
  1568a600
- Added vcf stats for each region bed file · 991c07af
  Peter van 't Hof authored 9 years ago
  
  991c07af
- Remove addSummaryJobs() · ea781d9b
  Peter van 't Hof authored 9 years ago
  
  ea781d9b
- Split variantcalllers in separated files · 89b7a259
  Peter van 't Hof authored 9 years ago
  
  89b7a259
Nov 19, 2015
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 18, 2015
- Added tests for resources · 1c21dd07
  Peter van 't Hof authored 9 years ago
  
  1c21dd07
- Style changes · cf01cf3b
  Peter van 't Hof authored 9 years ago
  
  cf01cf3b
Nov 17, 2015
- Added test on pipeline name · 03737d70
  Peter van 't Hof authored 9 years ago
  
  03737d70
- Change some value to non-freevar · 80917351
  Peter van 't Hof authored 9 years ago
  
  80917351
- Changed logging · b5b9eb61
  Peter van 't Hof authored 9 years ago
  
  b5b9eb61
- Added test to SampleLibraryTag · 343ac6e1
  Peter van 't Hof authored 9 years ago
  
  343ac6e1
- Added unit tests · fd445e8c
  Peter van 't Hof authored 9 years ago
  
  fd445e8c
Nov 16, 2015
- Remove override method, now uses the bases class · d9d380c7
  Peter van 't Hof authored 9 years ago
  
  d9d380c7
- Fix samples dir · 7c57f730
  Peter van 't Hof authored 9 years ago
  
  7c57f730
Nov 11, 2015
- Add fixme · 2a64a1d6
  Peter van 't Hof authored 9 years ago
  
  2a64a1d6
- Disabled intermediate markduplicates · 364b0d00
  Peter van 't Hof authored 9 years ago
  
  364b0d00
Nov 09, 2015
- Added version command for star · bcadec7e
  Peter van 't Hof authored 9 years ago
  
  bcadec7e
- Reformat · 4b8b6517
  Peter van 't Hof authored 9 years ago
  
  4b8b6517
- Added some scaladocs · fc7085f6
  Peter van 't Hof authored 9 years ago
  
  fc7085f6
- Added automated input file checking · 20cb9393
  Peter van 't Hof authored 9 years ago
  
  20cb9393
- fixed jobOutputFile · 67f8504c
  Peter van 't Hof authored 9 years ago
  
  67f8504c
- Added logging · 3ba6f191
  Peter van 't Hof authored 9 years ago
  
  3ba6f191
- Fixed unit testing · 07b5f7bf
  Peter van 't Hof authored 9 years ago
  
  07b5f7bf
- Fixed small bug · 24205501
  Peter van 't Hof authored 9 years ago
  
  24205501
Nov 08, 2015
- Catch nullpointers · a1d89efc
  Peter van 't Hof authored 9 years ago
  
  a1d89efc
- Remove unused import · 869fb362
  Peter van 't Hof authored 9 years ago
  
  869fb362
- fix method name · 8c4f0b93
  Peter van 't Hof authored 9 years ago
  
  8c4f0b93
- Added more infor for deps files · fe2465f9
  Peter van 't Hof authored 9 years ago
  
  fe2465f9
- Fixed jobOutputFile · 0d5df191
  Peter van 't Hof authored 9 years ago
  
  0d5df191
- Enforce absolute paths for input files · 10524ce8
  Peter van 't Hof authored 9 years ago
  
  10524ce8