Commits · 52928227c6ece8944b9c1a8d997456b6cbaf8d94 · Mirrors / biopet.biopet

Oct 02, 2015
- Fix code style warnings · 52928227
  Peter van 't Hof authored 9 years ago
  
  52928227
- Move input for gzip to stdin to not remove file · 2156f192
  Peter van 't Hof authored 9 years ago
  
  2156f192
- Fixed summary files of flexiprep · 5d5c30c1
  Peter van 't Hof authored 9 years ago
  
  5d5c30c1
Sep 30, 2015
- Removed test · 310b07ef
  Peter van 't Hof authored 9 years ago
  
  310b07ef
Sep 29, 2015
- Switch to fifo pipes · 8ae539f7
  Peter van 't Hof authored 9 years ago
  
  8ae539f7
Sep 28, 2015
- Changed own vmem · adb6ffe1
  Peter van 't Hof authored 9 years ago
  
  adb6ffe1
- Adding summary stats · f42be845
  Peter van 't Hof authored 9 years ago
  
  f42be845
- Fixed resources · 6fc77a78
  Peter van 't Hof authored 9 years ago
  
  6fc77a78
Sep 27, 2015
- Fixed single-end runs · 6bad7eaf
  Peter van 't Hof authored 9 years ago
  
  6bad7eaf
Sep 25, 2015
- Added deps · 5096c156
  Peter van 't Hof authored 9 years ago
  
  5096c156
- Fix fastqc dependency · 206c7f01
  Peter van 't Hof authored 9 years ago
  
  206c7f01
- Fixed QcCommand · 7a3bf3b2
  Peter van 't Hof authored 9 years ago
  
  7a3bf3b2
Sep 24, 2015
- Added FilePipes · 04210893
  Peter van 't Hof authored 9 years ago
  
  04210893
Sep 23, 2015
- Added support to have a pipe as input file · f298fe2c
  Peter van 't Hof authored 9 years ago
  
  f298fe2c
- Remove count tests · 839b0c12
  Peter van 't Hof authored 9 years ago
  
  839b0c12
- Refactor flexiprep, more pipes are used now · c6c7c899
  Peter van 't Hof authored 9 years ago
  
  c6c7c899
- Adding a QC command · 8e950ef8
  Peter van 't Hof authored 9 years ago
  
  8e950ef8
Sep 18, 2015
- Fixed unit tests · 6c7f4701
  Peter van 't Hof authored 9 years ago
  
  6c7f4701
- Fastq sync is not intermediate · 884125eb
  Peter van 't Hof authored 9 years ago
  
  (cherry picked from commit 5f7b2cbe)
  884125eb
- Fixed case class · bd6eae2c
  Peter van 't Hof authored 9 years ago
  
  bd6eae2c
- Fastq sync is not intermediate · 5f7b2cbe
  Peter van 't Hof authored 9 years ago
  
  5f7b2cbe
- Adding input files to check · 3c83721a
  Peter van 't Hof authored 9 years ago
  
  3c83721a
Sep 17, 2015
- Fixed qc stats in report · ac12d5a9
  Peter van 't Hof authored 9 years ago
  
  ac12d5a9
Sep 14, 2015
- style changes · 643418a2
  Peter van 't Hof authored 9 years ago
  
  643418a2
Sep 13, 2015
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored 9 years ago
  
  f3343df9
- Rscript usable without core now · 7d112c68
  Peter van 't Hof authored 9 years ago
  
  7d112c68
Sep 11, 2015
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored 9 years ago
  
  eb97957f
Sep 10, 2015
- Moved config to utils · a81bce67
  Peter van 't Hof authored 9 years ago
  
  a81bce67
Sep 08, 2015
- Fix compile error · 43ec6aff
  Peter van 't Hof authored 9 years ago
  
  43ec6aff
- Piping compliant · b996ef68
  Peter van 't Hof authored 9 years ago
  
  b996ef68
- Remove sumarizable from seqtk · 38022912
  Peter van 't Hof authored 9 years ago
  
  38022912
- Switch seqstat to init jobs · 94d9ba32
  Peter van 't Hof authored 9 years ago
  
  94d9ba32
Sep 04, 2015
- Changing to SNAPSHOT version, this is following the maven convention · f550b637
  Peter van 't Hof authored 9 years ago
  
  f550b637
Aug 25, 2015
- Fixed testing · 02733716
  Peter van 't Hof authored 9 years ago
  
  02733716
Aug 14, 2015
- Added a option to not keep the last fastq file anymore · d4e45996
  Peter van 't Hof authored 9 years ago
  
  d4e45996
Jul 30, 2015
- Bumb version to 0.5.0-DEV · c3b83b90
  Peter van 't Hof authored 9 years ago
  
  c3b83b90
- Bumb version to 0.4.0 · 6186881d
  Peter van 't Hof authored 9 years ago
  
  6186881d
Jul 28, 2015
- Bumb version to 0.4.0-RC2 · d5834cba
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC2 v0.4.0-RC2
  
  d5834cba
Jul 27, 2015
- Bumb version 0.4.0-RC1 · 5224df5b
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC1 v0.4.0-RC1
  
  5224df5b
- Adding license · bcc9debe
  Peter van 't Hof authored 9 years ago
  
  bcc9debe