Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
5f7b2cbe
Commit
5f7b2cbe
authored
Sep 18, 2015
by
Peter van 't Hof
Browse files
Fastq sync is not intermediate
parent
76488b88
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
5f7b2cbe
...
...
@@ -221,6 +221,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
fqSync
.
outputFastq1
=
swapExt
(
outDir
,
R1
,
R1_ext
,
".sync"
+
R1_ext
)
fqSync
.
outputFastq2
=
swapExt
(
outDir
,
R2
.
get
,
R2_ext
,
".sync"
+
R2_ext
)
fqSync
.
outputStats
=
swapExt
(
outDir
,
R1
,
R1_ext
,
".sync.stats"
)
fqSync
.
isIntermediate
=
true
fqSync
.
deps
:::=
deps
add
(
fqSync
)
addSummarizable
(
fqSync
,
"fastq_sync"
)
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment