Commits · 9305e435d3c4b07309e4104933fa99d6721b7b2a · biowdl / tasks

Jun 20, 2018
- Add more memory · 9305e435
  Peter van 't Hof authored 6 years ago
  
  9305e435
- Merge branch 'develop' into BIOWDL-36 · 9a2681c4
  Cats authored 6 years ago
  
  9a2681c4
- Merge pull request #23 from biowdl/BIOWDL-34 · e5b86e77
  Cats authored 6 years ago
  
  Add memory runtime for validate fastq
  Unverified
  
  e5b86e77
- change memory params · 46848563
  Ruben Vorderman authored 6 years ago
  
  46848563
- change memory params · 73b240ec
  Ruben Vorderman authored 6 years ago
  
  73b240ec
- add runtime stuff to validatefastq · 67a9dbfc
  Ruben Vorderman authored 6 years ago
  
  67a9dbfc
Jun 19, 2018
- Merge pull request #22 from biowdl/BIOWDL-34 · 3df5d7b6
  Peter van 't Hof authored 6 years ago
  
  Add validatefastq
  Unverified
  
  3df5d7b6
- add stderr · 4382c7b7
  Ruben Vorderman authored 6 years ago
  
  4382c7b7
- remove duplicate jar and mem · 2f1e467c
  Cats authored 6 years ago
  
  2f1e467c
- fix flatten · 0696ab06
  Cats authored 6 years ago
  
  0696ab06
- fix flatten issue? · 7be31de0
  Cats authored 6 years ago
  
  7be31de0
- add validatefastq · a0de5e64
  Ruben Vorderman authored 6 years ago
  
  a0de5e64
- Merge pull request #21 from biowdl/BIOWDL-35 · 08f85049
  Peter van 't Hof authored 6 years ago
  
  Added seqstat, set minlength for cutadapt to 1.
  Unverified
  
  08f85049
- fix review points · 9253f307
  Ruben Vorderman authored 6 years ago
  
  9253f307
Jun 18, 2018
- Merge remote-tracking branch 'origin/BIOWDL-36' into BIOWDL-36 · 39ca1721
  pjvan_thof authored 6 years ago
  
  39ca1721
- remove duplicate -Xmx and -jar · ced5696b
  Cats authored 6 years ago
  
  ced5696b
- Fixing commandline arguments · 86aebe5b
  pjvan_thof authored 6 years ago
  
  86aebe5b
- WIP · 545cdb47
  pjvan_thof authored 6 years ago
  
  545cdb47
Jun 14, 2018
- set minimumlength to 1 by default · 5ddecde6
  Ruben Vorderman authored 6 years ago
  
  5ddecde6
- fix output file · 3b0baaa5
  Ruben Vorderman authored 6 years ago
  
  3b0baaa5
- more sensible names · eff1af58
  Ruben Vorderman authored 6 years ago
  
  eff1af58
- add output · 43c38d8b
  Ruben Vorderman authored 6 years ago
  
  43c38d8b
- added SeqStat · 9bc3b50a
  Ruben Vorderman authored 6 years ago
  
  9bc3b50a
- toolJar is a file not a string · ffe31f1f
  Ruben Vorderman authored 6 years ago
  
  ffe31f1f
- start on seqstat · 3eef8316
  Ruben Vorderman authored 6 years ago
  
  3eef8316
- fixing gatk mem option · d0fa5d55
  pjvan_thof authored 6 years ago
  
  d0fa5d55
- Fixing picard executables · 4841f1ce
  pjvan_thof authored 6 years ago
  
  4841f1ce
- Revert "Added glob's to output files" · 691a6392
  Peter van 't Hof authored 6 years ago
  
  This reverts commit 138d3606
  691a6392
- Revert "Fixing output" · 830a39b8
  Peter van 't Hof authored 6 years ago
  
  This reverts commit 17af04e8
  830a39b8
- Fixing output · 17af04e8
  Peter van 't Hof authored 6 years ago
  
  17af04e8
- Added glob's to output files · 138d3606
  Peter van 't Hof authored 6 years ago
  
  138d3606
Jun 13, 2018
- Add dbsnp to baserecalibraction · fcc09ede
  Peter van 't Hof authored 6 years ago
  
  fcc09ede
- Added dbsnp · cdd00894
  Peter van 't Hof authored 6 years ago
  
  cdd00894
- Fixing double args · dd862229
  Peter van 't Hof authored 6 years ago
  
  dd862229
- remove duplication · 549cd9f8
  Ruben Vorderman authored 6 years ago
  
  549cd9f8
- Update forgotten tool · 1885db3c
  pjvan_thof authored 6 years ago
  
  1885db3c
- all biopet tools now also usable with conda · 9ca8d3c4
  pjvan_thof authored 6 years ago
  
  9ca8d3c4
- Added picard as a non jar command · 27f54c49
  pjvan_thof authored 6 years ago
  
  27f54c49
- Added gatk as a non jar command · c0bbdd8c
  pjvan_thof authored 6 years ago
  
  c0bbdd8c
- Merge pull request #20 from biowdl/BIOWDL-25 · ad685f61
  Ruben Vorderman authored 6 years ago
  
  fix conda command SampleConfig
  Unverified
  
  ad685f61