set minimumlength to 1 by default

5ddecde6 · Ruben Vorderman · 3b0baaa5 · 5ddecde6
Commit 5ddecde6 authored 6 years ago by Ruben Vorderman
--- a/cutadapt.wdl
+++ b/cutadapt.wdl
@@ -33,7 +33,7 @@ task cutadapt {
    String? stripSuffix
    String? prefix
    String? suffix
-    Int? minimumLength
+    Int? minimumLength = 1  # Necessary to prevent creation of empty reads
    Int? maximumLength
    Int? maxN
    Boolean? discardTrimmed