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Commit ced5696b authored by Cats's avatar Cats
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remove duplicate -Xmx and -jar

parent 545cdb47
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1 merge request!24Changes after testing
......@@ -216,7 +216,6 @@ task GenotypeGVCFs {
${preCommand}
${toolCommand} \
-Xmx${mem}G -jar ${gatkJar} \
GenotypeGVCFs \
-R ${refFasta} \
-O ${outputPath} \
......@@ -267,7 +266,6 @@ task HaplotypeCallerGvcf {
set -e -o pipefail
${preCommand}
${toolCommand} \
-Xmx${mem}G -jar ${gatkJar} \
HaplotypeCaller \
-R ${refFasta} \
-O ${gvcfPath} \
......
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