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Created with Raphaël 2.2.023Nov222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714119874326Apr25181713121110654329Mar2120191615141312986126Feb22219831Jan3029191817Merge pull request #75 from biowdl/BIOWDL-135Merge branch 'BIOWDL-135' of https://github.com/biowdl/tasks into BIOWDL-135remove optionalMerge branch 'develop' into BIOWDL-135fix non existing outputfix namefix filenameadd dependenciesfix select_first errorsadress review commentsMerge branch 'develop' into BIOWDL-78work on outputsadd multiqc taskstart on multiqcMerge pull request #73 from biowdl/BIOWDL-128hackishly workaround cromwell issueindex stuffadd gffreadMerge pull request #72 from biowdl/BIOWDL-127typo and more commentsfix commandredo somaticseq commandsadd mkdir commandadd cpatMerge pull request #71 from biowdl/BIOWDL-126some modifications to task so it will runcorrect wdl syntax mistakesadd missed_introns outputcontinue on taskadded outputDir possibilityfix problems caused by merging developMerge branch 'develop' into BIOWDL-78add gffcompareMerge pull request #70 from biowdl/BIOWDL-120increase basecounter memoryincrease splitNCigarReads memoryincrease memory modifier for VcfStatsMerge branch 'BIOWDL-120' of https://github.com/biowdl/tasks into BIOWDL-120add GatherVcfsadd notSplitContigs option to ScatterRegions
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