Commits · 40852ab167a7705814c41cd2aa1e5513e05fdec8 · biowdl / tasks

May 14, 2018
- add runtime section for samtools view · 40852ab1
  Ruben Vorderman authored 6 years ago
  
  40852ab1
May 09, 2018
- solve caching problem in bwa.wdl · 9aa30710
  Ruben Vorderman authored 6 years ago
  
  9aa30710
- fix SamToFastq · fdf3af30
  Ruben Vorderman authored 6 years ago
  
  fdf3af30
- fix bwamem task · 3cb3a224
  Ruben Vorderman authored 6 years ago
  
  3cb3a224
- fix output of bwa index task · e10f8acc
  Ruben Vorderman authored 6 years ago
  
  e10f8acc
- fix output of bwa index task · 71f30e02
  Ruben Vorderman authored 6 years ago
  
  71f30e02
- fix bwa index output file error · 4e4f4bf8
  Ruben Vorderman authored 6 years ago
  
  4e4f4bf8
May 07, 2018
- output file should not be optional · ef2914cb
  Ruben Vorderman authored 6 years ago
  
  ef2914cb
- add picard SamToFastq · 5893adcc
  Ruben Vorderman authored 6 years ago
  
  5893adcc
- add samtools application · 264627ed
  Ruben Vorderman authored 6 years ago
  
  264627ed
- Merge branch 'SASC-741' of https://github.com/biowdl/tasks into SASC-741 · 910c9ab0
  Ruben Vorderman authored 6 years ago
  
  910c9ab0
- add FastQsync · 5a961182
  Ruben Vorderman authored 6 years ago
  
  5a961182
- alphabetic ordering · 11e8277e
  Ruben Vorderman authored 6 years ago
  
  11e8277e
- Merge pull request #10 from biowdl/iterative · 2aff5d1d
  Peter van 't Hof authored 6 years ago
  
  Extra tasks required for assembly.
  Unverified
  
  2aff5d1d
- add input bam · 89f4ea33
  Ruben Vorderman authored 6 years ago
  
  89f4ea33
- only create link when output dir is given · ad62f715
  Ruben Vorderman authored 6 years ago
  
  ad62f715
- add FastQsync · c64b14cb
  Ruben Vorderman authored 6 years ago
  
  c64b14cb
- alphabetic ordering · ebf51e72
  Ruben Vorderman authored 6 years ago
  
  ebf51e72
- evaluate outputpaths before command section · 30bfec34
  Ruben Vorderman authored 6 years ago
  
  View commits for tag phhv1assembly phhv1assembly
  
  30bfec34
May 04, 2018
- add extra operater to concatenateTextFiles · d619ed18
  Ruben Vorderman authored 6 years ago
  
  d619ed18
- added bwa index and samtools fastq · a5d69668
  Ruben Vorderman authored 6 years ago
  
  a5d69668
- add fastq task · b3545b27
  Ruben Vorderman authored 6 years ago
  
  b3545b27
May 03, 2018
- fix unicycler memory · 63c2d46b
  Ruben Vorderman authored 6 years ago
  
  63c2d46b
- fix a few issues in spades · dabe9af0
  Ruben Vorderman authored 6 years ago
  
  dabe9af0
Apr 18, 2018
- change license · f023e04b
  Ruben Vorderman authored 6 years ago
  
  f023e04b
- remove poretools.wdl · 97bff342
  Ruben Vorderman authored 6 years ago
  
  97bff342
- merge master · 10e3ffc6
  Ruben Vorderman authored 6 years ago
  
  10e3ffc6
Apr 17, 2018
- Merge pull request #8 from biowdl/run_time · 0ee95d1b
  Peter van 't Hof authored 6 years ago
  
  Run time settings and additional adjustments
  Unverified
  
  0ee95d1b
Apr 13, 2018
- fix SplitNCigarReads · 689a2f2c
  Cats authored 6 years ago
  
  689a2f2c
Apr 12, 2018
- fix Map key issue star · 24520e97
  Cats authored 6 years ago
  
  24520e97
- threads should be cpu · bce833ff
  Cats authored 6 years ago
  
  bce833ff
- typing fix · 79cbf42a
  Cats authored 6 years ago
  
  79cbf42a
Apr 11, 2018
- small adjustments regarding runtime · cc9f145f
  Cats authored 6 years ago
  
  cc9f145f
Apr 10, 2018
- change memory settings · f6d9691c
  Cats authored 6 years ago
  
  f6d9691c
Apr 06, 2018
- fix the way custom memory values are handeled? · 09f9e67f
  Cats authored 6 years ago
  
  09f9e67f
Apr 05, 2018
- link instead of merge if one bam file · f22018df
  Cats authored 6 years ago
  
  f22018df
- rename gff to gtf · e1a70e6e
  Cats authored 6 years ago
  
  e1a70e6e
- add runtime to scatterRegions · fec7883a
  Cats authored 6 years ago
  
  fec7883a
- adjust memory · 38b1c5f1
  Cats authored 6 years ago
  
  38b1c5f1
Apr 04, 2018
- typo · fe987d91
  Cats authored 6 years ago
  
  fe987d91