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Commit 40852ab1 authored by Ruben Vorderman's avatar Ruben Vorderman
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add runtime section for samtools view

parent 9aa30710
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1 merge request!11Changes needed for the iterative assembly pipeline
......@@ -129,6 +129,7 @@ task view {
Int? excludeFilter
Int? excludeSpecificFilter
Int? threads
Int? memory
command {
set -e -o pipefail
......@@ -148,4 +149,8 @@ task view {
output {
File outputFile = outputFileName
}
runtime {
cpu: select_first([threads, 1])
memory: select_first([memory, 1])
}
}
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