add input bam

89f4ea33 · Ruben Vorderman · ad62f715 · 89f4ea33
Commit 89f4ea33 authored 6 years ago by Ruben Vorderman
--- a/samtools.wdl
+++ b/samtools.wdl
@@ -95,7 +95,7 @@ task fastq {
        ${true="-O" false="" outputQuality} \
        ${"-c " + compressionLevel} \
        ${"--threads " + totalThreads} \
-
+        ${inputBam}
    }
    output {
        File read1 = outputRead1