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biowdl
tasks
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cc9f145f
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cc9f145f
authored
6 years ago
by
Cats
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small adjustments regarding runtime
parent
f6d9691c
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1 merge request
!8
Run time settings and additional adjustments
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star.wdl
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star.wdl
stringtie.wdl
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stringtie.wdl
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View file @
cc9f145f
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@@ -13,7 +13,7 @@ task Star {
String? twopassMode
Array[String]? outSAMattrRGline
Floa
t? memory
In
t? memory
#TODO needs to be extended for all possible output extensions
Map[String, String] samOutputNames = {"BAM SortedByCoordinate": "sortedByCoord.out.bam"}
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stringtie.wdl
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@@ -28,6 +28,6 @@ task Stringtie {
}
runtime {
threads: select_first([threads])
threads: select_first([threads
, 1
])
}
}
\ No newline at end of file
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