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Commit fdf3af30 authored by Ruben Vorderman's avatar Ruben Vorderman
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fix SamToFastq

parent 3cb3a224
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1 merge request!11Changes needed for the iterative assembly pipeline
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......@@ -169,6 +169,7 @@ task SamToFastq {
java \
-Xmx${mem}G \
-jar ${picard_jar} \
SamToFastq \
I=${inputBam} \
${"FASTQ=" + outputRead1} \
${"SECOND_END_FASTQ=" + outputRead2} \
......
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