Commits · 3d8b32b2b6ceb0371c0f8e40735858d2a17a793c · biowdl / tasks

Jul 23, 2018
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- gatk to 1.0 · 0e6bde49
  Ruben Vorderman authored 6 years ago
  
  0e6bde49
Jun 19, 2018
- remove duplicate jar and mem · 2f1e467c
  Cats authored 6 years ago
  
  2f1e467c
- fix flatten · 0696ab06
  Cats authored 6 years ago
  
  0696ab06
- fix flatten issue? · 7be31de0
  Cats authored 6 years ago
  
  7be31de0
Jun 18, 2018
- remove duplicate -Xmx and -jar · ced5696b
  Cats authored 6 years ago
  
  ced5696b
- Fixing commandline arguments · 86aebe5b
  pjvan_thof authored 6 years ago
  
  86aebe5b
Jun 14, 2018
- fixing gatk mem option · d0fa5d55
  pjvan_thof authored 6 years ago
  
  d0fa5d55
Jun 13, 2018
- Add dbsnp to baserecalibraction · fcc09ede
  Peter van 't Hof authored 6 years ago
  
  fcc09ede
- Added dbsnp · cdd00894
  Peter van 't Hof authored 6 years ago
  
  cdd00894
- Fixing double args · dd862229
  Peter van 't Hof authored 6 years ago
  
  dd862229
- remove duplication · 549cd9f8
  Ruben Vorderman authored 6 years ago
  
  549cd9f8
- Update forgotten tool · 1885db3c
  pjvan_thof authored 6 years ago
  
  1885db3c
- Added gatk as a non jar command · c0bbdd8c
  pjvan_thof authored 6 years ago
  
  c0bbdd8c
Jun 11, 2018
- style · 01f15d00
  Cats authored 6 years ago
  
  01f15d00
- add bam index to ApplyBQSR input · 7957c85f
  Cats authored 6 years ago
  
  7957c85f
- style · e2c52a71
  Cats authored 6 years ago
  
  e2c52a71
Jun 08, 2018
- styling and paths · 8b27e8aa
  Cats authored 6 years ago
  
  8b27e8aa
May 30, 2018
- requested changes and memory settings · fb1a2c68
  Cats authored 6 years ago
  
  fb1a2c68
May 17, 2018
- use stdout() and fix regex · 52a6e6b1
  Cats authored 6 years ago
  
  52a6e6b1
May 07, 2018
- fix splitNCigarReads index output · 0c6f1f23
  Cats authored 6 years ago
  
  0c6f1f23
Apr 26, 2018
- update gatk.wdl · 8f114ab2
  Cats authored 6 years ago
  
  8f114ab2
Apr 25, 2018
- add limitBAMsortRAM · d1f31cb7
  Cats authored 6 years ago
  
  d1f31cb7
Apr 13, 2018
- fix SplitNCigarReads · 689a2f2c
  Cats authored 6 years ago
  
  689a2f2c
Apr 10, 2018
- change memory settings · f6d9691c
  Cats authored 6 years ago
  
  f6d9691c
Apr 06, 2018
- fix the way custom memory values are handeled? · 09f9e67f
  Cats authored 6 years ago
  
  09f9e67f
Apr 04, 2018
- adjust memory · 75742e19
  Cats authored 6 years ago
  
  75742e19
- adjust memory · b0d40e66
  Cats authored 6 years ago
  
  b0d40e66
Apr 03, 2018
- add runtime settings · 93240a92
  Cats authored 6 years ago
  
  93240a92
Mar 21, 2018
- add intervals option to SplitNCigarReads · a7104e27
  Cats authored 7 years ago
  
  a7104e27
Mar 20, 2018
- add fasta index and dict · 33f3aa9a
  Cats authored 7 years ago
  
  33f3aa9a
Mar 19, 2018
- add SplitNCigarReads · 817cb4ce
  Cats authored 7 years ago
  
  817cb4ce
Mar 12, 2018
- Adding precommands · a4effb10
  Peter van 't Hof authored 7 years ago
  
  a4effb10
Mar 09, 2018
- Adding combineGVFs · ccebb5b5
  Peter van 't Hof authored 7 years ago
  
  ccebb5b5
- Adding combineGVFs · b7e531ee
  Peter van 't Hof authored 7 years ago
  
  b7e531ee
- Added genotyping step · 3dacefb3
  Peter van 't Hof authored 7 years ago
  
  3dacefb3
- Fixed argument · 93c2816f
  Peter van 't Hof authored 7 years ago
  
  93c2816f
- Fixed argument · 6663e0b0
  Peter van 't Hof authored 7 years ago
  
  6663e0b0
- Fixed command · c90ca837
  Peter van 't Hof authored 7 years ago
  
  c90ca837
- Adding haplotypecaller step · 49c6df69
  Peter van 't Hof authored 7 years ago
  
  49c6df69