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Commit 6663e0b0 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed argument

parent c90ca837
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......@@ -91,7 +91,7 @@ task HaplotypeCallerGvcf {
java ${"-Dsamjdk.compression_level=" + compression_level} -Xmx4G -jar ${gatk_jar} \
HaplotypeCaller \
-R ${ref_fasta} \
-o ${gvcf_basename}.vcf.gz \
-O ${gvcf_basename}.vcf.gz \
-I ${sep=" -I " input_bams} \
-L ${sep=' -L ' interval_list} \
-ERC GVCF \
......
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