git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@519 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@518 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

Added affiliations to the list of authors in the ESHG abstract.


git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@517 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

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git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@504 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

This bug was noticed and reported by S Venkata Suresh Kumar.


git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@503 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

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git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@496 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

For UD slices we also generate g. descriptions on the chromosome reference. We
now also apply the roll rule there and use correct ranges and sequences on the
reverse strand. Fixes #75.


git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@495 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

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During import of the NCBI transcript mappings, CDS start or stop positions
were not picked up for some transcripts (where these are on exon boundaries).

Bug reported by S Venkata Suresh Kumar.


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Fetching genbank files was broken due to new default parameter values in the
efetch service. See http://www.ncbi.nlm.nih.gov/mailman/pipermail/utilities-announce/2012-February/000085.html

Also fix dbSNP converter web interface by properly logging IP address.


git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@481 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

Added simple error handling for the description extractor.



git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@480 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

describe.py:
- Module that provides the Variant Description Extractor functions.

__init__.py:
- Added an automated copyright year update.

website.py:
- Added the Variant Description Extractor web interface.

templates/descriptionExtract.html:
-  Template page for the Variant Description Extractor.

templates/snp.html:
templates/menu.html:
templates/converter.html:
templates/index.html:
templates/parse.html:
- Cosmetic changes.

Added a presentation.



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