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Commit d8f97ead authored by Vermaat's avatar Vermaat
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Add another test case by S Venkata Suresh Kumar

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@502 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
parent 80cbca62
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......@@ -66,7 +66,7 @@ class TestConverter():
Test for correct mapping information on genes where CDS start or stop
is exactly on the border of an exon.
Bug reported February 24 by S Venkata Suresh Kumartest.
Bug reported February 24, 2012 by S Venkata Suresh Kumar.
"""
converter = self._converter('hg19')
coding = converter.chrom2c('NC_000001.10:g.115259837_115259837delT', 'list')
......@@ -76,3 +76,17 @@ class TestConverter():
assert 'NM_001130523.1:c.*953delA' in coding
assert 'NM_001007553.2:c.*953delA' in coding
assert 'NM_001130523.2:c.*953delA' in coding
def test_S_Venkata_Suresh_Kumar_more(self):
"""
Another test for correct mapping information on genes where CDS start
or stop is exactly on the border of an exon.
Bug reported March 21, 2012 by S Venkata Suresh Kumar.
"""
converter = self._converter('hg19')
coding = converter.chrom2c('NC_000001.10:g.160012314_160012329del16', 'list')
assert 'NM_002241.4:c.-27250-7_-27242del16' not in coding
assert 'NM_002241.3:c.-27340-7_-27332del16' not in coding
assert 'NM_002241.4:c.1-7_9del16' in coding
assert 'NM_002241.3:c.1-7_9del16' in coding
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