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Commit bb73f36f authored by Vermaat's avatar Vermaat
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Further improvements to NBIC poster

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@515 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
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......@@ -24,7 +24,7 @@
Unambiguous and correct sequence variant descriptions are of utmost
importance for DNA diagnostics. Descriptions can be checked and corrected
with the {\em Mutalyzer sequence variation nomenclature checker}
(Fig.~\ref{figure:namecheck}) (\color{red}\bt{http://www.mutalyzer.nl/}\color{LUMCBlue})
(Fig.~\ref{figure:namecheck}) (\color{red}\bt{https://mutalyzer.nl/}\color{LUMCBlue})
following the Human Genome Variation Society (HGVS) sequence variant
nomenclature recommendations~\cite{HGVS}.
......@@ -73,14 +73,14 @@
\vspace{1cm}
\centerline{\texttt{\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}~~\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}~\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}}}
\centerline{\texttt{|||||~~|||||||||||~||||||||~|||||||||~||||}}
\centerline{\texttt{\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{red}{T}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}~\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{green}{C}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}}}
\texttt{~~~\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}~~\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}~\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}~~~}reference\\
\texttt{~~~|||||~~|||||||||||~||||||||~|||||||||~||||}\\
\texttt{~~~\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{red}{T}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}~\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{green}{C}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}~~~}variant
\vspace{1cm}
By comparing the sequences, the following HGVS description will be
extracted: \texttt{g.[5\_6insTT;17del;26A>C;35dup]}
By comparing the sequences, the following HGVS description of the variant
sequence will be extracted: \texttt{g.[5\_6insTT;17del;26A>C;35dup]}
\vspace{1cm}
......@@ -122,7 +122,8 @@
As future work we plan to implement description extraction from reference
sequences either identified by accession number or manually uploaded.
This will enable, for example, easy construction of descriptions for the
difference between two transcript reference sequences.
difference between different versions of reference sequence, either
genomic or transcript.
}
\colorBlock{BlueBg}{Name Checking}{1}{
\begin{figure}
......
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