Laros authored 10 years ago and Vermaat committed 9 years ago

ins[T;A;T;G] should be insTATG

This is a work in progress as there still seem to be some bugs. For example,
some unit tests fail due to incorrect descriptions generated and others fail
due to a crash.

Add some JSON and SOAP service tests

Slack notifications for Travis CI builds

Release 2.0.7

Use esummary 2.0 response format

Return fault code and description on RPC service errors

Instead of just raising an Exception which is serialized to the client
as 'The request could not be completed', we now always raise a Fault
which is serialized as a SOAP Fault object or as a JSON object with
faultcode and faultstring properties (and HTTP 500 response status).

This fixes Trac #41.

Release 2.0.6

Fixes #24

SQLite accepted the incorrect non-aggregate use of columns missing from
the GROUP BY, whereas PostgreSQL did not.

Added batch script and windows instructions.

Discard incomplete features in genbank files

Many genbank reference files contain more than one gene, especially
slices from an assembly. Some of these genes may be incomplete in
the reference file (i.e., either start or end exceeds the outer
coordinates). We cannot really do anything with these genes, so we
discard them during parsing.

Add getGeneLocation webservice method

Given a gene symbol and optional genome build, this returns the location
of the gene.

Primary motivation for this is LOVD, where it will be used in combination
with sliceChromsome as an alternative for sliceChromosomeByGene which only
works on the fixed Ensembl genome build.

Fix error in git tag instructions