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mutalyzer
Commits
649d7169
Commit
649d7169
authored
11 years ago
by
Laros
Committed by
Vermaat
9 years ago
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Fixed inserting raw sequence bug.
ins[T;A;T;G] should be insTATG
parent
926ab303
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mutalyzer/describe.py
+4
-2
4 additions, 2 deletions
mutalyzer/describe.py
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4 additions
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2 deletions
mutalyzer/describe.py
+
4
−
2
View file @
649d7169
...
...
@@ -509,8 +509,10 @@ def var2RawVar(s1, s2, var, seq_list=[], DNA=True):
#if
return
RawVar
(
DNA
=
DNA
,
start
=
var
.
reference_start
,
end
=
var
.
reference_start
+
1
,
inserted
=
seq_list
or
SeqList
(
s2
[
var
.
sample_start
:
var
.
sample_end
]),
type
=
"
ins
"
,
shift
=
shift
)
inserted
=
seq_list
or
SeqList
([
s2
[
var
.
sample_start
:
var
.
sample_end
]]),
type
=
"
ins
"
,
shift
=
shift
,
sample_start
=
var
.
sample_start
,
sample_end
=
var
.
sample_end
)
#if
# Deletion.
...
...
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