Discard incomplete genes in genbank reference files
Many genbank reference files contain more than one gene, especially slices from an assembly. Some of these genes may be incomplete in the reference file (i.e., either start or end exceeds the outer coordinates). We cannot really do anything with these genes, so we discard them during parsing.
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- CHANGES.rst 4 additions, 1 deletionCHANGES.rst
- mutalyzer/parsers/genbank.py 14 additions, 0 deletionsmutalyzer/parsers/genbank.py
- tests/test_parsers_genbank.py 19 additions, 0 deletionstests/test_parsers_genbank.py
- tests/test_variantchecker.py 7 additions, 11 deletionstests/test_variantchecker.py
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