Commits · d0e1be17b9022ff03c41d2661552c00a65e5d54e · Mirrors / biopet.biopet

Feb 23, 2016
- Recover the licence files · d0e1be17
  Wai Yi Leung authored 9 years ago
  
  d0e1be17
- Remove Yamsvp code and optimize BamUtils. · 628069f0
  Wai Yi Leung authored 9 years ago
  
  628069f0
Feb 22, 2016
- Optimizations... style · 40e9aadf
  Wai Yi Leung authored 9 years ago
  
  40e9aadf
- Adding tests for BamUtils · 5def7c50
  Wai Yi Leung authored 9 years ago
  
  5def7c50
- Adding pindel tests · 31982c15
  Wai Yi Leung authored 9 years ago
  
  31982c15
- Order fixes · 9ce0cde0
  Wai Yi Leung authored 9 years ago
  
  9ce0cde0
- Added test for bam arg · 30e7d8ce
  Peter van 't Hof authored 9 years ago
  
  30e7d8ce
- Added test for wrong caller · 1cafa1af
  Peter van 't Hof authored 9 years ago
  
  1cafa1af
- Added summary tests · 0d3f776d
  Peter van 't Hof authored 9 years ago
  
  0d3f776d
Feb 21, 2016
- Fix style · be396e68
  Peter van 't Hof authored 9 years ago
  
  be396e68
- Added testing for delly options · 4194de0a
  Peter van 't Hof authored 9 years ago
  
  4194de0a
- Added basic unit tests to sv calling · 08bedeee
  Peter van 't Hof authored 9 years ago
  
  08bedeee
- Style fixes · 0e4c9da7
  Peter van 't Hof authored 9 years ago
  
  0e4c9da7
Feb 17, 2016
- Added unit tests to ValidateFastq · 5fde3293
  Peter van 't Hof authored 9 years ago
  
  5fde3293
- Remove duplicate tool list · 625488b9
  Peter van 't Hof authored 9 years ago
  
  625488b9
- Adding tool to executable · 635a1a75
  Peter van 't Hof authored 9 years ago
  
  635a1a75
- Added check to output files of flexiprep also · 207613f6
  Peter van 't Hof authored 9 years ago
  
  207613f6
Feb 16, 2016
- changed error messages spelling · 3f86deaf
  Sander van der Zeeuw authored 9 years ago
  
  3f86deaf
- Fix small bug · 93d87c58
  Peter van 't Hof authored 9 years ago
  
  93d87c58
- Added check abort step in pipeline · 097f37b0
  Peter van 't Hof authored 9 years ago
  
  097f37b0
- Adding ValidateFastq to flexiprep · 7c863726
  Peter van 't Hof authored 9 years ago
  
  7c863726
- Renamed tool · 46599c3f
  Peter van 't Hof authored 9 years ago
  
  46599c3f
- Added quality encoding check · bb3991e7
  Peter van 't Hof authored 9 years ago
  
  bb3991e7
- add some more to the test. · d966c368
  Sander Bollen authored 9 years ago
  
  d966c368
- Added duplicate check · 89ed20eb
  Peter van 't Hof authored 9 years ago
  
  89ed20eb
Feb 12, 2016
- Fix typo · 088aa902
  Peter van 't Hof authored 9 years ago
  
  088aa902
- Simplyfy additional sections · 8215133a
  Peter van 't Hof authored 9 years ago
  
  8215133a
- Fix file name · 27775a71
  Peter van 't Hof authored 9 years ago
  
  27775a71
- Fix typo · 45d0659f
  Peter van 't Hof authored 9 years ago
  
  45d0659f
Feb 10, 2016
- fix #273 · 0bca2e4f
  Sander Bollen authored 9 years ago
  
  0bca2e4f
- Fix code warnings · 2c82ed9b
  Peter van 't Hof authored 9 years ago
  
  2c82ed9b
- Moved Rscript file · 67e9c74a
  Peter van 't Hof authored 9 years ago
  
  67e9c74a
- Replace upac symbols in mpileup · 85865437
  Peter van 't Hof authored 9 years ago
  
  85865437
- Remove duplicated file · 6bcae6c1
  Peter van 't Hof authored 9 years ago
  
  6bcae6c1
Feb 09, 2016
- Added scala docs to multisampleMapping · 78ff9834
  Peter van 't Hof authored 9 years ago
  
  78ff9834
- Fix prefix of variantcalling · 7ace0d2a
  Peter van 't Hof authored 9 years ago
  
  7ace0d2a
- Make inverse of the boolean to fix issue #272 · 0372b00e
  Wai Yi Leung authored 9 years ago
  
  0372b00e
Feb 08, 2016
- Raise memory of varscan · e16d2e05
  Peter van 't Hof authored 9 years ago
  
  e16d2e05
- Remove unused imports · 2654e5c6
  Peter van 't Hof authored 9 years ago
  
  2654e5c6
- Added extra check for forcing abolute paths for input files · 4fa85007
  Peter van 't Hof authored 9 years ago
  
  4fa85007