Skip to content
Snippets Groups Projects
Commit 0e4c9da7 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Style fixes

parent b9350819
No related branches found
No related tags found
No related merge requests found
package nl.lumc.sasc.biopet.tools
import java.io.{OutputStream, PrintStream, ByteArrayOutputStream}
import java.io.{ OutputStream, PrintStream, ByteArrayOutputStream }
import java.nio.file.Paths
import htsjdk.samtools.fastq.FastqRecord
import nl.lumc.sasc.biopet.utils.Logging
import org.apache.log4j.{FileAppender, Appender}
import org.apache.log4j.{ FileAppender, Appender }
import org.scalatest.Matchers
import org.scalatest.testng.TestNGSuite
import org.testng.annotations.{DataProvider, Test}
import org.testng.annotations.{ DataProvider, Test }
import scala.collection.JavaConversions._
/**
* Created by pjvan_thof on 2/17/16.
*/
* Created by pjvan_thof on 2/17/16.
*/
class ValidateFastqTest extends TestNGSuite with Matchers {
@Test
......@@ -38,17 +38,17 @@ class ValidateFastqTest extends TestNGSuite with Matchers {
@DataProvider(name = "providerGetPossibleEncodings")
def providerGetPossibleEncodings = Array(
Array(None, None, Nil),
Array(Some('A'), None, Nil),
Array(None, Some('A'), Nil),
Array(Some('E'), Some('E'), List("Sanger", "Solexa", "Illumina 1.3+", "Illumina 1.5+", "Illumina 1.8+")),
Array(Some('+'), Some('+'), List("Sanger", "Illumina 1.8+")),
Array(Some('!'), Some('I'), List("Sanger", "Illumina 1.8+")),
Array(Some('!'), Some('J'), List("Illumina 1.8+")),
Array(Some(';'), Some('h'), List("Solexa")),
Array(Some('@'), Some('h'), List("Solexa", "Illumina 1.3+")),
Array(Some('C'), Some('h'), List("Solexa", "Illumina 1.3+", "Illumina 1.5+"))
)
Array(None, None, Nil),
Array(Some('A'), None, Nil),
Array(None, Some('A'), Nil),
Array(Some('E'), Some('E'), List("Sanger", "Solexa", "Illumina 1.3+", "Illumina 1.5+", "Illumina 1.8+")),
Array(Some('+'), Some('+'), List("Sanger", "Illumina 1.8+")),
Array(Some('!'), Some('I'), List("Sanger", "Illumina 1.8+")),
Array(Some('!'), Some('J'), List("Illumina 1.8+")),
Array(Some(';'), Some('h'), List("Solexa")),
Array(Some('@'), Some('h'), List("Solexa", "Illumina 1.3+")),
Array(Some('C'), Some('h'), List("Solexa", "Illumina 1.3+", "Illumina 1.5+"))
)
@Test(dataProvider = "providerGetPossibleEncodings")
def testGetPossibleEncodings(min: Option[Char], max: Option[Char], output: List[String]): Unit = {
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment