Commit 3f86deaf authored by Sander van der Zeeuw's avatar Sander van der Zeeuw
Browse files

changed error messages spelling

parent 93d87c58
......@@ -53,7 +53,7 @@ object ValidateFastq extends ToolCommand {
for (recordR1 <- readFq1.iterator()) {
counter += 1
if (readFq2.map(_.hasNext) == Some(false))
throw new IllegalStateException("R2 has less reads then R1")
throw new IllegalStateException("R2 contains less reads then R1")
//Getting R2 record, None if it's single end
val recordR2 = readFq2.map(_.next())
......@@ -76,7 +76,7 @@ object ValidateFastq extends ToolCommand {
//if R2 is longer then R1 print an error code and exit the tool
if (readFq2.map(_.hasNext) == Some(true))
throw new IllegalStateException("R2 has more reads then R1")
throw new IllegalStateException("R2 contains more reads then R1")
logger.info(s"Possible quality encodings found: ${getPossibleEncodings.mkString(", ")}")
......@@ -159,7 +159,7 @@ object ValidateFastq extends ToolCommand {
case _ => throw new IllegalStateException(s"Non IUPAC symbols identified")
}
if (record.getReadString.size != record.getBaseQualityString.size)
throw new IllegalStateException(s"Sequence length do not match quality length")
throw new IllegalStateException(s"Sequence length does not match quality length")
}
/**
......@@ -174,6 +174,6 @@ object ValidateFastq extends ToolCommand {
if (!(id1 == id2 ||
id1.stripSuffix("/1") == id2.stripSuffix("/2") ||
id1.stripSuffix(".1") == id2.stripSuffix(".2")))
throw new IllegalStateException(s"sequenceHeaders does not match. R1: '${r1.getReadHeader}', R2: '${r2.getReadHeader}'")
throw new IllegalStateException(s"Sequence headers do not match. R1: '${r1.getReadHeader}', R2: '${r2.getReadHeader}'")
}
}
\ No newline at end of file
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