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628069f0

Commit 628069f0 authored 9 years ago by Wai Yi Leung

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Remove Yamsvp code and optimize BamUtils.

parent 40e9aadf

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protected/LICENSE 3 additions, 1 deletion

protected/LICENSE
protected/LICENSE 3 additions, 1 deletion

protected/LICENSE
public/LICENSE 13 additions, 1 deletion

public/LICENSE
public/LICENSE 13 additions, 1 deletion

public/LICENSE
public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/BamUtils.scala 1 addition, 1 deletion

...s/src/main/scala/nl/lumc/sasc/biopet/utils/BamUtils.scala
public/biopet-utils/src/test/scala/nl/lumc/sasc/biopet/utils/BamUtilsTest.scala 2 additions, 2 deletions

...c/test/scala/nl/lumc/sasc/biopet/utils/BamUtilsTest.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala 0 additions, 2 deletions

...l/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala
public/yamsvp/.gitignore 0 additions, 1 deletion

public/yamsvp/.gitignore
public/yamsvp/pom.xml 0 additions, 47 deletions

public/yamsvp/pom.xml
public/yamsvp/src_old/main/scala/nl/lumc/sasc/biopet/pipelines/yamsvp/Yamsvp.scala 0 additions, 155 deletions

...n/scala/nl/lumc/sasc/biopet/pipelines/yamsvp/Yamsvp.scala
public/yamsvp/src_old/test/resources/log4j.properties 0 additions, 25 deletions

public/yamsvp/src_old/test/resources/log4j.properties

with 35 additions and 237 deletions

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