Commits · bd7ca140ce04a75d3864377e60d432f1f66a271e · Mirrors / biopet.biopet

Nov 19, 2015
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 18, 2015
- Added tests for resources · 1c21dd07
  Peter van 't Hof authored 9 years ago
  
  1c21dd07
- Style changes · cf01cf3b
  Peter van 't Hof authored 9 years ago
  
  cf01cf3b
Nov 17, 2015
- Added test on pipeline name · 03737d70
  Peter van 't Hof authored 9 years ago
  
  03737d70
- Change some value to non-freevar · 80917351
  Peter van 't Hof authored 9 years ago
  
  80917351
- Changed logging · b5b9eb61
  Peter van 't Hof authored 9 years ago
  
  b5b9eb61
- Added test to SampleLibraryTag · 343ac6e1
  Peter van 't Hof authored 9 years ago
  
  343ac6e1
- Added unit tests · fd445e8c
  Peter van 't Hof authored 9 years ago
  
  fd445e8c
Nov 16, 2015
- Remove override method, now uses the bases class · d9d380c7
  Peter van 't Hof authored 9 years ago
  
  d9d380c7
- Fix samples dir · 7c57f730
  Peter van 't Hof authored 9 years ago
  
  7c57f730
Nov 11, 2015
- Add fixme · 2a64a1d6
  Peter van 't Hof authored 9 years ago
  
  2a64a1d6
- Disabled intermediate markduplicates · 364b0d00
  Peter van 't Hof authored 9 years ago
  
  364b0d00
Nov 09, 2015
- Added version command for star · bcadec7e
  Peter van 't Hof authored 9 years ago
  
  bcadec7e
- Reformat · 4b8b6517
  Peter van 't Hof authored 9 years ago
  
  4b8b6517
- Added some scaladocs · fc7085f6
  Peter van 't Hof authored 9 years ago
  
  fc7085f6
- Added automated input file checking · 20cb9393
  Peter van 't Hof authored 9 years ago
  
  20cb9393
- fixed jobOutputFile · 67f8504c
  Peter van 't Hof authored 9 years ago
  
  67f8504c
- Added logging · 3ba6f191
  Peter van 't Hof authored 9 years ago
  
  3ba6f191
- Fixed unit testing · 07b5f7bf
  Peter van 't Hof authored 9 years ago
  
  07b5f7bf
- Fixed small bug · 24205501
  Peter van 't Hof authored 9 years ago
  
  24205501
Nov 08, 2015
- Catch nullpointers · a1d89efc
  Peter van 't Hof authored 9 years ago
  
  a1d89efc
- Remove unused import · 869fb362
  Peter van 't Hof authored 9 years ago
  
  869fb362
- fix method name · 8c4f0b93
  Peter van 't Hof authored 9 years ago
  
  8c4f0b93
- Added more infor for deps files · fe2465f9
  Peter van 't Hof authored 9 years ago
  
  fe2465f9
- Fixed jobOutputFile · 0d5df191
  Peter van 't Hof authored 9 years ago
  
  0d5df191
- Enforce absolute paths for input files · 10524ce8
  Peter van 't Hof authored 9 years ago
  
  10524ce8
- Added .par for faster IO · 5bd17150
  Peter van 't Hof authored 9 years ago
  
  5bd17150
- Fixed java types · bfbe5e04
  Peter van 't Hof authored 9 years ago
  
  bfbe5e04
Nov 07, 2015
- Added files to json · efac6ec2
  Peter van 't Hof authored 9 years ago
  
  efac6ec2
Nov 06, 2015
- Added init version of dependency debug mode · b938c1b8
  Peter van 't Hof authored 9 years ago
  
  b938c1b8
- Adding addError methods · 892540af
  Peter van 't Hof authored 9 years ago
  
  892540af
- Better error handeling on wrong values · abed23bb
  Peter van 't Hof authored 9 years ago
  
  abed23bb
- Fix null pointer on missing values · f861ddbb
  Peter van 't Hof authored 9 years ago
  
  f861ddbb
Nov 04, 2015
- adapters table was not filled correctly · 239b74f8
  Sander van der Zeeuw authored 9 years ago
  
  239b74f8
- num_reads_discarded changed into num_reads_discarded_total · 75e1b598
  Sander van der Zeeuw authored 9 years ago
  
  75e1b598
- fixes in gentrap report · e2a94705
  Sander van der Zeeuw authored 9 years ago
  
  e2a94705
Nov 03, 2015
- Adding d3 to the core · 1b6cc64b
  Peter van 't Hof authored 9 years ago
  
  1b6cc64b
- Fixed gears parsing · 9002b6ce
  Peter van 't Hof authored 9 years ago
  
  9002b6ce
Nov 02, 2015
- changes in gsnap piping and fix bug in fastqsync · 0a897753
  Sander van der Zeeuw authored 9 years ago
  
  0a897753
- Style changes · d7a5a9ef
  Peter van 't Hof authored 9 years ago
  
  d7a5a9ef