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Commit d7a5a9ef authored by Peter van 't Hof's avatar Peter van 't Hof
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Style changes

parent 7696695b
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @ d7a5a9ef
......@@ -153,9 +153,9 @@ object ShivaReport extends MultisampleReportBuilder {
"Alignment" -> BammetricsReport.bamMetricsPage(summary, Some(sampleId), Some(libId)) ::
(if (flexiprepExecuted) List("QC" -> FlexiprepReport.flexiprepPage) else Nil
) ::: (if (krakenExecuted) List("Gears - Metagenomics" -> ReportPage(List(), List(
"Sunburst analysis" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/gearsSunburst.ssp"
)), Map()))
else Nil), "Alignment" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp") ::
"Sunburst analysis" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/gearsSunburst.ssp"
)), Map()))
else Nil), "Alignment" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp") ::
(if (flexiprepExecuted) List(
"QC reads" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp"),
"QC bases" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp")
......
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