1. 22 Sep, 2015 2 commits
  2. 18 Sep, 2015 1 commit
  3. 17 Sep, 2015 2 commits
    • Peter van 't Hof's avatar
      Merge remote-tracking branch 'origin/develop' into feature-pipeable · b230161f
      Peter van 't Hof authored
      Conflicts:
      	public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
      	public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BedToInterval.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BedtoolsCoverageToCounts.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSplitter.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/MergeTables.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/MpileupToVcf.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/PrefixFastq.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SageCountFastq.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SageCreateLibrary.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SageCreateTagCounts.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SquishBed.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfFilter.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala
      	public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VepNormalizer.scala
      	public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
      	public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/SeqtkSeq.scala
      b230161f
    • Sander Bollen's avatar
      Merge branch 'feature-split_modules' into 'develop' · d1b4060c
      Sander Bollen authored
      Feature split modules
      
      Fix for #197 and #203 
      
      See merge request !235
      d1b4060c
  4. 16 Sep, 2015 6 commits
  5. 14 Sep, 2015 5 commits
  6. 13 Sep, 2015 13 commits
  7. 11 Sep, 2015 1 commit
  8. 10 Sep, 2015 10 commits