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biopet.biopet
Commits
baf41943
Commit
baf41943
authored
Sep 16, 2015
by
Peter van 't Hof
Browse files
Change logger message
parent
fd46bc2a
Changes
1
Hide whitespace changes
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public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfFilter.scala
View file @
baf41943
...
...
@@ -180,9 +180,9 @@ object VcfFilter extends ToolCommand {
}
else
invertedWriter
.
foreach
(
_
.
add
(
record
))
counterTotal
+=
1
if
(
counterTotal
%
100000
==
0
)
logger
.
info
(
counterTotal
+
"
variants processed,
"
+
counterLeft
+
" left
"
)
if
(
counterTotal
%
100000
==
0
)
logger
.
info
(
s
"$
counterTotal variants processed,
$
counterLeft
passed filter
"
)
}
logger
.
info
(
counterTotal
+
"
variants processed,
"
+
counterLeft
+
" left
"
)
logger
.
info
(
s
"$
counterTotal variants processed,
$
counterLeft
passed filter
"
)
reader
.
close
()
writer
.
close
()
invertedWriter
.
foreach
(
_
.
close
())
...
...
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