Commits · a5bf52fd5524f73a2bb5083ca410bc9fd4f24356 · Mirrors / biopet.biopet

Nov 24, 2015
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c
Nov 23, 2015
- Bump to 0.5.0-RC2 · 16d2711f
  Peter van 't Hof authored 9 years ago
  
  16d2711f
Nov 19, 2015
- Bumb version to 0.5.0-RC1 · 19a93bbb
  Peter van 't Hof authored 9 years ago
  
  19a93bbb
Oct 27, 2015
- Refactor usage of Delly pipeline a bit by adding CatVariants and moving Delly to Shiva · a68e86c1
  Wai Yi Leung authored 9 years ago
  
  a68e86c1
Sep 24, 2015
- move old classes for later use · f1615a59
  Peter van 't Hof authored 9 years ago
  
  f1615a59
- Move breaking classes · 95d45227
  Peter van 't Hof authored 9 years ago
  
  95d45227
Sep 11, 2015
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored 9 years ago
  
  eb97957f
Sep 10, 2015
- Moved config to utils · a81bce67
  Peter van 't Hof authored 9 years ago
  
  a81bce67
Sep 04, 2015
- Changing to SNAPSHOT version, this is following the maven convention · f550b637
  Peter van 't Hof authored 9 years ago
  
  f550b637
Jul 30, 2015
- Bumb version to 0.5.0-DEV · c3b83b90
  Peter van 't Hof authored 9 years ago
  
  c3b83b90
- Bumb version to 0.4.0 · 6186881d
  Peter van 't Hof authored 9 years ago
  
  6186881d
Jul 28, 2015
- Bumb version to 0.4.0-RC2 · d5834cba
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC2 v0.4.0-RC2
  
  d5834cba
Jul 27, 2015
- Bumb version 0.4.0-RC1 · 5224df5b
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC1 v0.4.0-RC1
  
  5224df5b
Jul 03, 2015
- Fix code style warnings · c7b928d3
  Peter van 't Hof authored 9 years ago
  
  c7b928d3
- Fix code style warnings · 2c323f38
  Peter van 't Hof authored 9 years ago
  
  2c323f38
Jul 01, 2015
- Optimize imports · 9812237c
  Peter van 't Hof authored 9 years ago
  
  9812237c
Jun 25, 2015
- Bump version to 0.3.2 · b77d7b4c
  bow authored 9 years ago
  
  View commits for tag v0.3.2 v0.3.2
  
  b77d7b4c
Jun 16, 2015
- Update code to v0.4 branch and fix usage of Ln and memory settings of VMEM,... · 4d46a85e
  Wai Yi Leung authored 9 years ago
  4d46a85e
Mar 19, 2015
- Bump version from 0.3.0 to 0.3.1 · d2efef6d
  Wai Yi Leung authored 10 years ago
  
  d2efef6d
Mar 17, 2015
- Bump version to 0.4.0-DEV · 5bd4ef22
  bow authored 10 years ago
  
  5bd4ef22
Mar 13, 2015
- Bump version to 0.3.0 · c5e27ef2
  bow authored 10 years ago
  
  c5e27ef2
Mar 11, 2015
- Bump version to 0.3.0-RC1 · a289c540
  bow authored 10 years ago
  
  a289c540
Feb 16, 2015
- Remove variable IDE files · 50400d8c
  bow authored 10 years ago
  
  50400d8c
Feb 13, 2015
- Added test log4j.properties · 64397750
  Peter van 't Hof authored 10 years ago
  
  64397750
Feb 10, 2015
- Add bam2wig in imls · 3a4a8459
  Peter van 't Hof authored 10 years ago
  
  3a4a8459
Feb 09, 2015
- Remove required from config calls · b8084935
  Peter van 't Hof authored 10 years ago
  
  b8084935
Feb 03, 2015
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored 10 years ago
  
  ad0c55bc
Jan 30, 2015
- Move SVcallers into the toplevel extensions directory · 43fc01cd
  Wai Yi Leung authored 10 years ago
  
  43fc01cd
- Refactor Yamsvp to new sample/lib model · 0f475cfa
  Wai Yi Leung authored 10 years ago
  
  0f475cfa
Jan 27, 2015
- Mask yamsvp code · 89b2c3cd
  Peter van 't Hof authored 10 years ago
  
  89b2c3cd
Jan 23, 2015
- Generate bamstats on the dedup · 5dad53d7
  Wai Yi Leung authored 10 years ago
  
  5dad53d7
Jan 20, 2015
- Changing pipeline to improved multisampleQScript · 33e6ef14
  Peter van 't Hof authored 10 years ago
  
  33e6ef14
Jan 15, 2015
- Adding imls to prevent major headaches · 7ff4c9b0
  Sander Bollen authored 10 years ago
  
  7ff4c9b0
Jan 05, 2015
- Adding IGVTools for creation of TDF files (Wiggle for IGV) · ab220766
  Wai Yi Leung authored 10 years ago
  
  ab220766
- Update yamsvp pipeline, link files · 7f36c0c0
  Wai Yi Leung authored 10 years ago
  
  7f36c0c0
Dec 17, 2014
- Remove the indexing requirement from sambamba, since this does this on the fly since version v0.5.0 · 482ffc59
  Wai Yi Leung authored 10 years ago
  
  482ffc59
Dec 09, 2014
- Change pom version · 06536548
  Peter van 't Hof authored 10 years ago
  
  06536548
- Change Pom to version 0.2.0 · 1572cb02
  Peter van 't Hof authored 10 years ago
  
  1572cb02
Dec 08, 2014
- Refactored VEPNormalizer tool · c47eecfe
  Sander Bollen authored 10 years ago
  
  c47eecfe