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Update code to v0.4 branch and fix usage of Ln and memory settings of VMEM,...
Update code to v0.4 branch and fix usage of Ln and memory settings of VMEM, settings for memory will be committed to the shark-config branch with recommended defaults.
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- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/breakdancer/BreakdancerCaller.scala 0 additions, 1 deletion...asc/biopet/extensions/breakdancer/BreakdancerCaller.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/clever/CleverCaller.scala 0 additions, 1 deletion.../nl/lumc/sasc/biopet/extensions/clever/CleverCaller.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/delly/Delly.scala 2 additions, 1 deletion...in/scala/nl/lumc/sasc/biopet/extensions/delly/Delly.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/delly/DellyCaller.scala 0 additions, 1 deletion...la/nl/lumc/sasc/biopet/extensions/delly/DellyCaller.scala
- public/yamsvp/src/main/scala/nl/lumc/sasc/biopet/pipelines/yamsvp/Yamsvp.scala 1 addition, 1 deletion...n/scala/nl/lumc/sasc/biopet/pipelines/yamsvp/Yamsvp.scala
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