Commits · a43106b2af70885b0c2a9103fadd72e2b31e26bd · Mirrors / biopet.biopet

Jan 25, 2016
- Fixed config conversions · a43106b2
  Peter van 't Hof authored 9 years ago
  
  a43106b2
- Added tables and heatmaps to basecounter · 9184d047
  Peter van 't Hof authored 9 years ago
  
  9184d047
- Added tables and heatmaps to summary · dd71e82b
  Peter van 't Hof authored 9 years ago
  
  dd71e82b
- Remove old code · 20fe80d7
  Peter van 't Hof authored 9 years ago
  
  20fe80d7
- Implement baseCounter in pipeline · 6d9cf7ee
  Peter van 't Hof authored 9 years ago
  
  6d9cf7ee
- Optimize imports · 4024e04f
  Peter van 't Hof authored 9 years ago
  
  4024e04f
Jan 20, 2016
- Disabled uncompilble code · dc31e3e8
  Peter van 't Hof authored 9 years ago
  
  dc31e3e8
- Move Bam2Wig to multisample mapping · 946e1e77
  Peter van 't Hof authored 9 years ago
  
  946e1e77
- Change ro preProcessBam · 4b084127
  Peter van 't Hof authored 9 years ago
  
  4b084127
- Major upgrade to gentrap class · 230ce86b
  Peter van 't Hof authored 9 years ago
  
  230ce86b
- Added cufflinks · de64cd6b
  Peter van 't Hof authored 9 years ago
  
  de64cd6b
- Fixed typo · 31720a62
  Peter van 't Hof authored 9 years ago
  
  31720a62
- Added htseqCount job · e4d8e06c
  Peter van 't Hof authored 9 years ago
  
  e4d8e06c
- Added files to summary · af59b702
  Peter van 't Hof authored 9 years ago
  
  af59b702
- Added heatmap plot · 1d1a6256
  Peter van 't Hof authored 9 years ago
  
  1d1a6256
- Added general merging · d411daac
  Peter van 't Hof authored 9 years ago
  
  d411daac
- Move script and init to main trait · 958e6ba4
  Peter van 't Hof authored 9 years ago
  
  958e6ba4
Jan 12, 2016
- Added empty implementations · 4b63e57c
  Peter van 't Hof authored 9 years ago
  
  4b63e57c
- Fix metrics · b93f2642
  Peter van 't Hof authored 9 years ago
  
  b93f2642
- Fix reference tag · 81d36084
  Peter van 't Hof authored 9 years ago
  
  81d36084
- Added html report to pipeline · 189a25d4
  Peter van 't Hof authored 9 years ago
  
  189a25d4
- Fixed report types · 9034e179
  Peter van 't Hof authored 9 years ago
  
  9034e179
Jan 11, 2016
- Change gentrap report to multisample mapping report · 56766d98
  Peter van 't Hof authored 9 years ago
  
  56766d98
- Disable report · 621ccaf4
  Peter van 't Hof authored 9 years ago
  
  621ccaf4
Jan 08, 2016
- Fixed rna metrics · 565f3979
  Peter van 't Hof authored 9 years ago
  
  565f3979
Jan 06, 2016
- Switch to multisample mapping · d9c88772
  Peter van 't Hof authored 9 years ago
  
  d9c88772
Nov 19, 2015
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 16, 2015
- Remove override method, now uses the bases class · d9d380c7
  Peter van 't Hof authored 9 years ago
  
  d9d380c7
- Fix samples dir · 7c57f730
  Peter van 't Hof authored 9 years ago
  
  7c57f730
Nov 09, 2015
- Fixed unit testing · 07b5f7bf
  Peter van 't Hof authored 9 years ago
  
  07b5f7bf
- Fixed small bug · 24205501
  Peter van 't Hof authored 9 years ago
  
  24205501
Nov 06, 2015
- Adding addError methods · 892540af
  Peter van 't Hof authored 9 years ago
  
  892540af
- Better error handeling on wrong values · abed23bb
  Peter van 't Hof authored 9 years ago
  
  abed23bb
- Fix null pointer on missing values · f861ddbb
  Peter van 't Hof authored 9 years ago
  
  f861ddbb
Nov 04, 2015
- adapters table was not filled correctly · 239b74f8
  Sander van der Zeeuw authored 9 years ago
  
  239b74f8
- num_reads_discarded changed into num_reads_discarded_total · 75e1b598
  Sander van der Zeeuw authored 9 years ago
  
  75e1b598
- fixes in gentrap report · e2a94705
  Sander van der Zeeuw authored 9 years ago
  
  e2a94705
Oct 16, 2015
- Style fix · c6ebdcae
  Peter van 't Hof authored 9 years ago
  
  c6ebdcae
Oct 15, 2015
- Gentrap test are now divided over 7 threads · 9cae1c11
  Peter van 't Hof authored 9 years ago
  
  9cae1c11
- added proper piping to bcftools and mpileup. [GENTRAP VARSCAN SHOULD BE TESTED] · 76da8883
  Sander van der Zeeuw authored 9 years ago
  
  76da8883