Commits · 9bfb488097603732d28e77e0fbe68596b9d3109f · Mirrors / biopet.biopet

Feb 27, 2015
- Added summary to VcfStats · 9bfb4880
  Peter van 't Hof authored 10 years ago
  
  9bfb4880
- Added gvcf mode · 5c545796
  Peter van 't Hof authored 10 years ago
  
  5c545796
Feb 26, 2015
- Updated Executable · 73995acb
  Peter van 't Hof authored 10 years ago
  
  73995acb
- Added allele modes · 85554525
  Peter van 't Hof authored 10 years ago
  
  85554525
- Adding UnifiedGenotyper · 25ee758d
  Peter van 't Hof authored 10 years ago
  
  25ee758d
- Add gatk variantcalling with haplotypecaller · 3c2bd820
  Peter van 't Hof authored 10 years ago
  
  3c2bd820
- Added implicit List[File] · 285e2e4d
  Peter van 't Hof authored 10 years ago
  
  285e2e4d
- Moved to new package · 7c5cd789
  Peter van 't Hof authored 10 years ago
  
  7c5cd789
- Added IndelRealigner and BaseRecalibration · 4c2d0bf5
  Peter van 't Hof authored 10 years ago
  
  4c2d0bf5
- Add ShiveGatk · 0d7fce54
  Peter van 't Hof authored 10 years ago
  
  0d7fce54
Feb 18, 2015
- Rename data to settings · 73435d56
  Peter van 't Hof authored 10 years ago
  
  73435d56
Feb 16, 2015
- Added summaries · d523db6c
  Peter van 't Hof authored 10 years ago
  
  d523db6c
- Added summary framework to mapping and flexiprep · 0c3deab9
  Peter van 't Hof authored 10 years ago
  
  0c3deab9
- Fix on index ln methods · d125c2f3
  Peter van 't Hof authored 10 years ago
  
  d125c2f3
- Fix output dirs and set default single sample calling off · 1062e3ab
  Peter van 't Hof authored 10 years ago
  
  1062e3ab
- Remove variable IDE files · 50400d8c
  bow authored 10 years ago
  
  50400d8c
Feb 14, 2015
- Fix threads / memlimit · 52a36f28
  Peter van 't Hof authored 10 years ago
  
  52a36f28
Feb 13, 2015
- Fix outputdirs · 589d229b
  Peter van 't Hof authored 10 years ago
  
  589d229b
- Added test log4j.properties · 64397750
  Peter van 't Hof authored 10 years ago
  
  64397750
Feb 12, 2015
- Remove unneeded "/" · 54eccd0a
  Peter van 't Hof authored 10 years ago
  
  54eccd0a
- Rename afterGraph to beforeGraph · e5e03434
  Peter van 't Hof authored 10 years ago
  
  e5e03434
- Change outputDir to File · 8ca365cb
  Peter van 't Hof authored 10 years ago
  
  8ca365cb
Feb 10, 2015
- Add bam2wig to iml · 24b13352
  Peter van 't Hof authored 10 years ago
  
  24b13352
- Add bam2wig in imls · 3a4a8459
  Peter van 't Hof authored 10 years ago
  
  3a4a8459
- Remove unused lines · 1f826562
  Peter van 't Hof authored 10 years ago
  
  1f826562
Feb 09, 2015
- Added bam2wig to gatk pipeline · 9b462417
  Peter van 't Hof authored 10 years ago
  
  9b462417
- Added link to final file when only 1 lib · 1144a30e
  Peter van 't Hof authored 10 years ago
  
  1144a30e
- Remove required from config calls · b8084935
  Peter van 't Hof authored 10 years ago
  
  b8084935
Feb 05, 2015
- Minor code refactor · b9f88a39
  Peter van 't Hof authored 10 years ago
  
  b9f88a39
- output name is now config value · 4842dd5c
  Peter van 't Hof authored 10 years ago
  
  4842dd5c
- Fix some options · c008141f
  Peter van 't Hof authored 10 years ago
  
  c008141f
Feb 04, 2015
- Added vcfstats to gatk pipeline · 5121ff20
  Peter van 't Hof authored 10 years ago
  
  5121ff20
Feb 03, 2015
- Change to option types · 71eb5183
  Peter van 't Hof authored 10 years ago
  
  71eb5183
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored 10 years ago
  
  ad0c55bc
- Name change · 29f9b30f
  Peter van 't Hof authored 10 years ago
  
  29f9b30f
- Implemented addMultisampleJobs method · 5f8a8375
  Peter van 't Hof authored 10 years ago
  
  5f8a8375
Jan 29, 2015
- Added BamToChromSizes · 96534e9b
  Peter van 't Hof authored 10 years ago
  
  96534e9b
- Added changes to idea depended files · fa3d7ed4
  Peter van 't Hof authored 10 years ago
  
  fa3d7ed4
- Init framework for BamToBigWig · 26ea8a50
  Peter van 't Hof authored 10 years ago
  
  26ea8a50
Jan 28, 2015
- Renaming values · 33f456b9
  Peter van 't Hof authored 10 years ago
  
  33f456b9