Commit 1f826562 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Remove unused lines

parent a921f48b
......@@ -92,7 +92,6 @@ class GatkVariantcalling(val root: Configurable) extends QScript with BiopetQScr
def biopetScript() {
scriptOutput.bamFiles = {
doublePreProces(if (preProcesBams) {
//var bamFiles: List[File] = Nil
for (inputBam <- inputBams) yield {
var bamFile = inputBam
if (useIndelRealigner)
......@@ -101,7 +100,6 @@ class GatkVariantcalling(val root: Configurable) extends QScript with BiopetQScr
bamFile = addBaseRecalibrator(bamFile, outputDir, isIntermediate = inputBams.size > 1)
bamFile
}
//bamFiles
} else {
inputBams
})
......
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