Commit 4842dd5c authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

output name is now config value

parent fb215ab1
......@@ -50,7 +50,7 @@ class GatkVariantcalling(val root: Configurable) extends QScript with BiopetQScr
def init() {
if (outputName == null && sampleID != null) outputName = sampleID
else if (outputName == null) outputName = "noname"
else if (outputName == null) outputName = config("output_name", default = "noname")
if (outputDir == null) throw new IllegalStateException("Missing Output directory on gatk module")
else if (!outputDir.endsWith("/")) outputDir += "/"
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment