Added summary framework to mapping and flexiprep
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- protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala 2 additions, 2 deletions...ala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
- public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala 2 additions, 2 deletions.../main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala 9 additions, 13 deletions...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepSummary.scala 2 additions, 2 deletions...mc/sasc/biopet/pipelines/flexiprep/FlexiprepSummary.scala
- public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala 2 additions, 2 deletions.../lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala
- public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala 25 additions, 23 deletions...scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
- public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala 2 additions, 2 deletions...a/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
- public/sage/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala 4 additions, 4 deletions.../main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala
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