Commits · 9bdd6fddda5c448639b553b3877b75b388987fd1 · Mirrors / biopet.biopet

Dec 11, 2015
- Use correct copyright header for Cutadapt wrapper in Flexiprep · 9bdd6fdd
  bow authored 9 years ago
  
  9bdd6fdd
Dec 10, 2015
- Use file names for logging errors in Flexiprep Cutadapt wrapper instead of read names · 9d748545
  bow authored 9 years ago
  
  9d748545
- Update None pattern match to use catch-all clause · d207b97f
  bow authored 9 years ago
  
  d207b97f
- Update adapters summary stats to be Map[String, Any] instead of (String, Int) · c1ccaa97
  bow authored 9 years ago
  
  c1ccaa97
- Initial fix for #238 · e7541377
  bow authored 9 years ago
  
  The issue is caused by the Cutadapt summary not being aware of the clipped sequence names. This merge request extends the existing Cutadapt wrapper in the Flexiprep module and makes it so that the wrapper is aware of FastQC.
  e7541377
Nov 26, 2015
- Merge branch 'fix-samplestsvtojson' into 'develop' · 8e1b1d70
  Peter van 't Hof authored 9 years ago
  
  changes in tool, since the checking for samples starting with a number went wrong. See merge request !285
  8e1b1d70
- changes in tool, since the checking for samples starting with a number went wrong. · 0b6db331
  Sander van der Zeeuw authored 9 years ago
  
  0b6db331
Nov 24, 2015
- Merge branch 'release-0.5.0' into develop · abb2a281
  Peter van 't Hof authored 9 years ago
  
  abb2a281
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c
Nov 23, 2015
- Bump to 0.5.0-RC2 · 16d2711f
  Peter van 't Hof authored 9 years ago
  
  16d2711f
- Added summary jobs to toucan · 5f03d3de
  Peter van 't Hof authored 9 years ago
  
  5f03d3de
Nov 19, 2015
- Fixed bowtie index · 7a8ef0e4
  Peter van 't Hof authored 9 years ago
  
  7a8ef0e4
- Bumb version to 0.5.0-RC1 · 19a93bbb
  Peter van 't Hof authored 9 years ago
  
  19a93bbb
- Fixed license headers · fceb39a9
  Peter van 't Hof authored 9 years ago
  
  fceb39a9
- Fixed License files · d5fbab5b
  Peter van 't Hof authored 9 years ago
  
  d5fbab5b
- Merge branch 'fix-tools_mainclass' into 'develop' · bd7ca140
  Sander Bollen authored 9 years ago
  
  Fixed bug in loading the mainClass for biopet tools Fixes a small bug in loading the mainClass of tools. When jenkins don't complain this can be merged. See merge request !281
  bd7ca140
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 18, 2015
- Merge branch 'feature-docs-0.5_quickfix' into 'develop' · 74f301a6
  Peter van 't Hof authored 9 years ago
  
  Error in Gentrap sample config in Documentation Please collect all minor documentation things in this ticket. See merge request !280
  74f301a6
- Merge branch 'feature-core_testing' into 'develop' · f55fdeda
  Sander Bollen authored 9 years ago
  
  Added unit tests see also #51 See merge request !278
  f55fdeda
- Merge branch 'fix-toucan' into 'develop' · b5500137
  Sander Bollen authored 9 years ago
  
  Fix toucan See merge request !279
  b5500137
- Error in Gentrap sample config in Documentation · 31942b60
  Wai Yi Leung authored 9 years ago
  
  31942b60
- Added tests for resources · 1c21dd07
  Peter van 't Hof authored 9 years ago
  
  1c21dd07
- Style changes · cf01cf3b
  Peter van 't Hof authored 9 years ago
  
  cf01cf3b
Nov 17, 2015
- Added test on pipeline name · 03737d70
  Peter van 't Hof authored 9 years ago
  
  03737d70
- Change some value to non-freevar · 80917351
  Peter van 't Hof authored 9 years ago
  
  80917351
- Changed logging · b5b9eb61
  Peter van 't Hof authored 9 years ago
  
  b5b9eb61
- Added test to SampleLibraryTag · 343ac6e1
  Peter van 't Hof authored 9 years ago
  
  343ac6e1
- Added unit tests · fd445e8c
  Peter van 't Hof authored 9 years ago
  
  fd445e8c
Nov 16, 2015
- Merge branch 'fix-gentrap_samples_dir' into 'develop' · 09e0d7e1
  Sander Bollen authored 9 years ago
  
  Fix samples dir gentrap See merge request !277
  09e0d7e1
- Remove override method, now uses the bases class · d9d380c7
  Peter van 't Hof authored 9 years ago
  
  d9d380c7
- Fix samples dir · 7c57f730
  Peter van 't Hof authored 9 years ago
  
  7c57f730
Nov 12, 2015
- Merge branch 'fix-docs' into 'develop' · 52f5fba3
  Wai Yi Leung authored 9 years ago
  
  Fix docs See merge request !276
  52f5fba3
- Fix docs · fe81db5c
  Peter van 't Hof authored 9 years ago
  
  fe81db5c
- Merge branch 'fix-scaladocs' into 'develop' · 06d2d668
  Wai Yi Leung authored 9 years ago
  
  Fixed scala docs in docs See merge request !275
  06d2d668
- Fixed scala docs in docs · a9c66805
  Peter van 't Hof authored 9 years ago
  
  a9c66805
- Merge branch 'feature-docs-developers-0.5.0' into 'develop' · 22bcad0f
  Peter van 't Hof authored 9 years ago
  
  Feature docs developers 0.5.0 Some fixes to the docs (last minute edits) See merge request !273
  22bcad0f
- Change mkdocs.yml to point to the scala docs (only works on server) · 82970657
  Wai Yi Leung authored 9 years ago
  
  82970657
- Update release notes and fix gears title · c6fd5e83
  Wai Yi Leung authored 9 years ago
  
  c6fd5e83
- change "java -jar command" to biopet · 6f6a94c8
  Wai Yi Leung authored 9 years ago
  
  6f6a94c8