Initial fix for #238
The issue is caused by the Cutadapt summary not being aware of the clipped sequence names. This merge request extends the existing Cutadapt wrapper in the Flexiprep module and makes it so that the wrapper is aware of FastQC.
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- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala 65 additions, 0 deletions...la/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala 2 additions, 2 deletions...a/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala
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