Commit fe81db5c authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix docs

parent 06d2d668
......@@ -8,7 +8,7 @@ The sample config should be in [__JSON__](http://www.json.org/) or [__YAML__](ht
- Second field should contain the __"libraries"__
- Third field contains __"R1" or "R2"__ or __"bam"__
- The fastq input files can be provided zipped and unzipped
- `output_dir` is a required setting that should be set either in a `config.json` or specified on the invocation command via -cv output_dir=<path/to/outputdir\>. The default value is to place the pipeline output in the current working directory.
- `output_dir` is a required setting that should be set either in a `config.json` or specified on the invocation command via -cv output_dir=<path/to/outputdir\>.
#### Example sample config
......
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