Commit 6f6a94c8 authored by Wai Yi Leung's avatar Wai Yi Leung
Browse files

change "java -jar command" to biopet

parent 33fad7e1
......@@ -30,7 +30,7 @@ Note that the pipeline also works on unpaired reads where one should only provid
To start the pipeline (remove `-run` for a dry run):
``` bash
java -jar Biopet-0.2.0.jar pipeline Flexiprep -run -outDir myDir \
biopet pipeline Flexiprep -run -outDir myDir \
-R1 myFirstReadPair -R2 mySecondReadPair -sample mySampleName \
-library myLibname -config mySettings.json
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