Commits · 9034e1798ae22df1d76b3ed28402cff2856c4ee6 · Mirrors / biopet.biopet

Jan 12, 2016
- Fixed report types · 9034e179
  Peter van 't Hof authored 9 years ago
  
  9034e179
Jan 11, 2016
- Change gentrap report to multisample mapping report · 56766d98
  Peter van 't Hof authored 9 years ago
  
  56766d98
Nov 19, 2015
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 16, 2015
- Remove override method, now uses the bases class · d9d380c7
  Peter van 't Hof authored 9 years ago
  
  d9d380c7
- Fix samples dir · 7c57f730
  Peter van 't Hof authored 9 years ago
  
  7c57f730
Nov 09, 2015
- Fixed unit testing · 07b5f7bf
  Peter van 't Hof authored 9 years ago
  
  07b5f7bf
- Fixed small bug · 24205501
  Peter van 't Hof authored 9 years ago
  
  24205501
Nov 06, 2015
- Adding addError methods · 892540af
  Peter van 't Hof authored 9 years ago
  
  892540af
- Better error handeling on wrong values · abed23bb
  Peter van 't Hof authored 9 years ago
  
  abed23bb
- Fix null pointer on missing values · f861ddbb
  Peter van 't Hof authored 9 years ago
  
  f861ddbb
Nov 04, 2015
- adapters table was not filled correctly · 239b74f8
  Sander van der Zeeuw authored 9 years ago
  
  239b74f8
- num_reads_discarded changed into num_reads_discarded_total · 75e1b598
  Sander van der Zeeuw authored 9 years ago
  
  75e1b598
- fixes in gentrap report · e2a94705
  Sander van der Zeeuw authored 9 years ago
  
  e2a94705
Oct 16, 2015
- Style fix · c6ebdcae
  Peter van 't Hof authored 9 years ago
  
  c6ebdcae
Oct 15, 2015
- Gentrap test are now divided over 7 threads · 9cae1c11
  Peter van 't Hof authored 9 years ago
  
  9cae1c11
- added proper piping to bcftools and mpileup. [GENTRAP VARSCAN SHOULD BE TESTED] · 76da8883
  Sander van der Zeeuw authored 9 years ago
  
  76da8883
- Remove "reference" from testing · f4fb8907
  Peter van 't Hof authored 9 years ago
  f4fb8907
- Remove "reference" from testing · 8bf162ad
  Peter van 't Hof authored 9 years ago
  
  8bf162ad
Oct 13, 2015
- Remove some testing · df83160f
  Peter van 't Hof authored 9 years ago
  
  df83160f
Sep 23, 2015
- Reference is not used in here · a2c583e8
  Peter van 't Hof authored 9 years ago
  
  a2c583e8
Sep 21, 2015
- Fix reference in varscan · 6b190fbd
  Peter van 't Hof authored 9 years ago
  
  6b190fbd
Sep 18, 2015
- Fixed unit tests · 6c7f4701
  Peter van 't Hof authored 9 years ago
  
  6c7f4701
- Add input files to pipelines · 4875e508
  Peter van 't Hof authored 9 years ago
  
  4875e508
Sep 13, 2015
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored 9 years ago
  
  f3343df9
Sep 11, 2015
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored 9 years ago
  
  eb97957f
Sep 10, 2015
- Moved config to utils · a81bce67
  Peter van 't Hof authored 9 years ago
  
  a81bce67
Sep 04, 2015
- Code style fix · 4ae12722
  Peter van 't Hof authored 9 years ago
  
  4ae12722
- Remove the need of merging the defaults anymore · 0586cbc2
  Peter van 't Hof authored 9 years ago
  
  0586cbc2
Sep 03, 2015
- Fix strand-specific separation in Gentrap · 665bf70c
  bow authored 9 years ago
  665bf70c
Aug 11, 2015
- Adding gmap_build · 6deb5726
  Peter van 't Hof authored 9 years ago
  
  6deb5726
Aug 06, 2015
- remove parallel data providers · 03d9db7b
  Peter van 't Hof authored 9 years ago
  
  03d9db7b
- enable parallel data providers · 907c8ddb
  Peter van 't Hof authored 9 years ago
  
  907c8ddb
Jul 27, 2015
- Adding license · bcc9debe
  Peter van 't Hof authored 9 years ago
  
  bcc9debe
Jul 16, 2015
- Fix symlinking of the final bai file · 12da6e96
  Sander van der Zeeuw authored 9 years ago
  
  12da6e96
Jul 03, 2015
- Fix code style warnings · 2c323f38
  Peter van 't Hof authored 9 years ago
  
  2c323f38
Jul 02, 2015
- https is working now, revert the change but keep the new layout and abbr tag.... · 82e665b3
  Wai Yi Leung authored 9 years ago
  82e665b3
- https is working now, revert the change but keep the new layout and abbr tag. · a83bb91e
  Wai Yi Leung authored 9 years ago
  
  a83bb91e
- Fix the link to sasc.lumc.nl (don't point to the https version, redirect is... · 96c79ed5
  Wai Yi Leung authored 9 years ago
  96c79ed5
Jul 01, 2015
- Optimize imports · 9812237c
  Peter van 't Hof authored 9 years ago
  
  9812237c
- Front page texts for report · 8282c888
  Sander Bollen authored 9 years ago
  
  8282c888