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biopet.biopet
Commits
907c8ddb
Commit
907c8ddb
authored
Aug 06, 2015
by
Peter van 't Hof
Browse files
enable parallel data providers
parent
1c8e147d
Changes
3
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protected/biopet-gatk-pipelines/src/test/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaTest.scala
View file @
907c8ddb
...
...
@@ -34,7 +34,7 @@ class ShivaTest extends TestNGSuite with Matchers {
}
}
@DataProvider
(
name
=
"shivaOptions"
)
@DataProvider
(
name
=
"shivaOptions"
,
parallel
=
true
)
def
shivaOptions
=
{
val
bool
=
Array
(
true
,
false
)
...
...
public/gentrap/src/test/scala/nl/lumc/sasc/biopet/pipelines/gentrap/GentrapTest.scala
View file @
907c8ddb
...
...
@@ -74,7 +74,7 @@ class GentrapTest extends TestNGSuite with Matchers {
"fragments_per_gene"
,
"fragments_per_exon"
,
"bases_per_gene"
,
"bases_per_exon"
,
"cufflinks_strict"
,
"cufflinks_guided"
,
"cufflinks_blind"
)
@DataProvider
(
name
=
"expMeasuresstrandProtocol"
)
@DataProvider
(
name
=
"expMeasuresstrandProtocol"
,
parallel
=
true
)
def
expMeasuresStrandProtocolProvider
=
{
//val sampleConfigs = Array(pairedOneSampleOneLib, pairedOneSampleTwoLib, pairedOneSampleThreeLib)
...
...
public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
View file @
907c8ddb
...
...
@@ -46,7 +46,7 @@ class MappingTest extends TestNGSuite with Matchers {
}
}
@DataProvider
(
name
=
"mappingOptions"
)
@DataProvider
(
name
=
"mappingOptions"
,
parallel
=
true
)
def
mappingOptions
=
{
val
aligners
=
Array
(
"bwa-mem"
,
"bwa-aln"
,
"star"
,
"star-2pass"
,
"bowtie"
,
"stampy"
,
"gsnap"
,
"tophat"
)
val
paired
=
Array
(
true
,
false
)
...
...
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