Commits · 6e7eeb414e751549da302fc82dfb8e8bd62aebe7 · Mirrors / biopet.biopet · GitLab

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Oct 21, 2015
- Fix typo of trait class ToolCommandFuntion -> ToolCommandFunction #221 · 6e7eeb41
  Wai Yi Leung authored Oct 21, 2015
  
  6e7eeb41
- Merge branch 'fix-flexiprep_noext' into 'develop' · 7d751299
  Sander Bollen authored Oct 21, 2015
  7d751299
Oct 20, 2015
- Merge branch 'feature-sample_name_check' into 'develop' · f535473f
  Sander Bollen authored Oct 20, 2015
  f535473f
- Changed error message · 0832f655
  Peter van 't Hof authored Oct 20, 2015
  
  0832f655
- change regex · bf1d0b71
  Peter van 't Hof authored Oct 20, 2015
  
  bf1d0b71
- Moved function to utils, this might be usefull in other pipelines · 954e0245
  Peter van 't Hof authored Oct 20, 2015
  
  954e0245
- Merge branch 'fix-versions' into 'develop' · 2e285818
  Sander Bollen authored Oct 20, 2015
  2e285818
Oct 19, 2015
- Use provided exts Set instead of zipExtensions · 6af00416
  bow authored Oct 19, 2015
  
  6af00416
- Remove R1_ext and R2_ext from Flexiprep · 90eaaf09
  bow authored Oct 19, 2015
  
  90eaaf09
- Add error message when a Flexiprep input file does not have the expected structure · 487324b4
  bow authored Oct 19, 2015
  
  487324b4
- Refactor filename and extension retrieval in Flexiprep · b4b6785a
  bow authored Oct 19, 2015
  
  b4b6785a
Oct 16, 2015
- Merge branch 'fix-memory_test_threads' into 'develop' · dafecf89
  Sander van der Zeeuw authored Oct 16, 2015
  dafecf89
- Limit memory for each test thread · 11579c5d
  Peter van 't Hof authored Oct 16, 2015
  
  11579c5d
- Style fix · c6ebdcae
  Peter van 't Hof authored Oct 16, 2015
  
  c6ebdcae
- Merge branch 'feature-parralel_mapping_tests' into 'develop' · aec67d97
  bow authored Oct 16, 2015
  aec67d97
- Merge remote-tracking branch 'remotes/origin/fix-mapping' into feature-parralel_mapping_tests · 25cc88c4
  Peter van 't Hof authored Oct 16, 2015
  
  25cc88c4
Oct 15, 2015
- Gentrap test are now divided over 7 threads · 9cae1c11
  Peter van 't Hof authored Oct 15, 2015
  
  9cae1c11
- Rename file · f8785ed4
  Peter van 't Hof authored Oct 15, 2015
  
  f8785ed4
- Remove some test and optimize code · c0d8c129
  Peter van 't Hof authored Oct 15, 2015
  
  c0d8c129
- Each aligner has his own class now · 08bcca4d
  Peter van 't Hof authored Oct 15, 2015
  
  08bcca4d
- Merge branch 'feature-scoverage' into 'develop' · ba0cf48a
  Sander Bollen authored Oct 15, 2015
  ba0cf48a
- Added jobs to pipejobs · d6272ab2
  Peter van 't Hof authored Oct 15, 2015
  
  d6272ab2
- Remove "reference" from testing · f4fb8907
  Peter van 't Hof authored Oct 15, 2015
  f4fb8907
- Remove "reference" from testing · 8bf162ad
  Peter van 't Hof authored Oct 15, 2015
  
  8bf162ad
- Code style · c82dc34f
  Peter van 't Hof authored Oct 15, 2015
  
  c82dc34f
- Fix code warnings · 29923378
  Peter van 't Hof authored Oct 15, 2015
  
  29923378
- Fixed version to single end executables · e2a873b6
  Peter van 't Hof authored Oct 15, 2015
  
  e2a873b6
- Fix picard versions · 99485cfd
  Peter van 't Hof authored Oct 15, 2015
  
  99485cfd
Oct 13, 2015
- Fix MatchError · b3da2df1
  Peter van 't Hof authored Oct 13, 2015
  
  b3da2df1
- Added version check for pipe jobs · 2a67db54
  Peter van 't Hof authored Oct 13, 2015
  
  2a67db54
- Added version to gatk commands · 1f0fcf1a
  Peter van 't Hof authored Oct 13, 2015
  
  1f0fcf1a
- Extracted version in a trait · 5688a64d
  Peter van 't Hof authored Oct 13, 2015
  
  5688a64d
- Merge branch 'fix-chunking' into 'develop' · 755c54b0
  Sander Bollen authored Oct 13, 2015
  755c54b0
- Remove some testing · df83160f
  Peter van 't Hof authored Oct 13, 2015
  
  df83160f
Oct 12, 2015
- Added a thread correction var · f03c70ff
  Peter van 't Hof authored Oct 12, 2015
  
  f03c70ff
- Fixed zipped input files · cb2f2556
  Peter van 't Hof authored Oct 12, 2015
  
  cb2f2556
- Fixed numberChunks in summary · 6f39a8ed
  Peter van 't Hof authored Oct 12, 2015
  
  6f39a8ed
Oct 09, 2015
- Fixed default values · 8dedd28a
  Peter van 't Hof authored Oct 9, 2015
  
  8dedd28a
- Make name more strict · 9f90d2be
  Peter van 't Hof authored Oct 9, 2015
  
  9f90d2be
- Fix zcat for chunking · ca9c7e5c
  Peter van 't Hof authored Oct 9, 2015
  
  ca9c7e5c