Commit dafecf89 authored by Sander van der Zeeuw's avatar Sander van der Zeeuw
Browse files

Merge branch 'fix-memory_test_threads' into 'develop'

Fix memory test threads

Java did take a few Gb's for each threads, on a desktop you have not enough memory anymore. Fixed this to give those threads a memory limit.

See merge request !255
parents aec67d97 11579c5d
......@@ -70,7 +70,7 @@ abstract class GentrapTestAbstract(val expressionMeasure: String) extends TestNG
val validExpressionMeasures = Set(
val validExpressionMeasures = Set(
"fragments_per_gene", "fragments_per_exon", "bases_per_gene", "bases_per_exon",
"cufflinks_strict", "cufflinks_guided", "cufflinks_blind")
......@@ -15,7 +15,7 @@
package nl.lumc.sasc.biopet.pipelines.mapping
import{File, FileOutputStream}
import{ File, FileOutputStream }
import nl.lumc.sasc.biopet.pipelines.flexiprep.Fastqc
......@@ -25,7 +25,7 @@ import
import org.broadinstitute.gatk.queue.QSettings
import org.scalatest.Matchers
import org.scalatest.testng.TestNGSuite
import org.testng.annotations.{AfterClass, DataProvider, Test}
import org.testng.annotations.{ AfterClass, DataProvider, Test }
* Test class for [[Mapping]]
......@@ -80,6 +80,7 @@
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