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biopet.biopet
Commits
25cc88c4
Commit
25cc88c4
authored
Oct 16, 2015
by
Peter van 't Hof
Browse files
Merge remote-tracking branch 'remotes/origin/fix-mapping' into feature-parralel_mapping_tests
parents
9cae1c11
55c9af30
Changes
1
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public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
View file @
25cc88c4
...
...
@@ -141,8 +141,8 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
paired
=
input_R2
.
isDefined
if
(
readgroupId
==
null
)
readgroupId
=
sampleId
.
get
+
"-"
+
libId
.
get
else
if
(
readgroupId
==
null
)
readgroupId
=
config
(
"readgroup_id"
)
if
(
readgroupId
==
null
)
readgroupId
=
config
(
"readgroup_id"
,
default
=
sampleId
.
get
+
"-"
+
libId
.
get
)
if
(
outputName
==
null
)
outputName
=
readgroupId
...
...
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