Commits · 6c3170cc9c0b5beab76b9ed416d0bba756349837 · Mirrors / biopet.biopet

Dec 15, 2015
- Refactor match statements · 6c3170cc
  Peter van 't Hof authored 9 years ago
  
  6c3170cc
Dec 11, 2015
- Store adapter stats name in a single variable · 4945f3ce
  bow authored 9 years ago
  
  4945f3ce
- Use correct copyright header for Cutadapt wrapper in Flexiprep · 9bdd6fdd
  bow authored 9 years ago
  
  9bdd6fdd
Dec 10, 2015
- Use file names for logging errors in Flexiprep Cutadapt wrapper instead of read names · 9d748545
  bow authored 9 years ago
  
  9d748545
- Update None pattern match to use catch-all clause · d207b97f
  bow authored 9 years ago
  
  d207b97f
- Update adapters summary stats to be Map[String, Any] instead of (String, Int) · c1ccaa97
  bow authored 9 years ago
  
  c1ccaa97
- Initial fix for #238 · e7541377
  bow authored 9 years ago
  
  The issue is caused by the Cutadapt summary not being aware of the clipped sequence names. This merge request extends the existing Cutadapt wrapper in the Flexiprep module and makes it so that the wrapper is aware of FastQC.
  e7541377
Nov 26, 2015
- changes in tool, since the checking for samples starting with a number went wrong. · 0b6db331
  Sander van der Zeeuw authored 9 years ago
  
  0b6db331
Nov 24, 2015
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c
Nov 23, 2015
- Bump to 0.5.0-RC2 · 16d2711f
  Peter van 't Hof authored 9 years ago
  
  16d2711f
- Added summary jobs to toucan · 5f03d3de
  Peter van 't Hof authored 9 years ago
  
  5f03d3de
Nov 19, 2015
- Fixed bowtie index · 7a8ef0e4
  Peter van 't Hof authored 9 years ago
  
  7a8ef0e4
- Bumb version to 0.5.0-RC1 · 19a93bbb
  Peter van 't Hof authored 9 years ago
  
  19a93bbb
- Fixed license headers · fceb39a9
  Peter van 't Hof authored 9 years ago
  
  fceb39a9
- Fixed License files · d5fbab5b
  Peter van 't Hof authored 9 years ago
  
  d5fbab5b
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 18, 2015
- Added tests for resources · 1c21dd07
  Peter van 't Hof authored 9 years ago
  
  1c21dd07
- Style changes · cf01cf3b
  Peter van 't Hof authored 9 years ago
  
  cf01cf3b
Nov 17, 2015
- Added test on pipeline name · 03737d70
  Peter van 't Hof authored 9 years ago
  
  03737d70
- Change some value to non-freevar · 80917351
  Peter van 't Hof authored 9 years ago
  
  80917351
- Changed logging · b5b9eb61
  Peter van 't Hof authored 9 years ago
  
  b5b9eb61
- Added test to SampleLibraryTag · 343ac6e1
  Peter van 't Hof authored 9 years ago
  
  343ac6e1
- Added unit tests · fd445e8c
  Peter van 't Hof authored 9 years ago
  
  fd445e8c
Nov 16, 2015
- Remove override method, now uses the bases class · d9d380c7
  Peter van 't Hof authored 9 years ago
  
  d9d380c7
- Fix samples dir · 7c57f730
  Peter van 't Hof authored 9 years ago
  
  7c57f730
Nov 11, 2015
- Add fixme · 2a64a1d6
  Peter van 't Hof authored 9 years ago
  
  2a64a1d6
- Disabled intermediate markduplicates · 364b0d00
  Peter van 't Hof authored 9 years ago
  
  364b0d00
Nov 09, 2015
- Added version command for star · bcadec7e
  Peter van 't Hof authored 9 years ago
  
  bcadec7e
- Reformat · 4b8b6517
  Peter van 't Hof authored 9 years ago
  
  4b8b6517
- Added some scaladocs · fc7085f6
  Peter van 't Hof authored 9 years ago
  
  fc7085f6
- Added automated input file checking · 20cb9393
  Peter van 't Hof authored 9 years ago
  
  20cb9393
- fixed jobOutputFile · 67f8504c
  Peter van 't Hof authored 9 years ago
  
  67f8504c
- Added logging · 3ba6f191
  Peter van 't Hof authored 9 years ago
  
  3ba6f191
- Fixed unit testing · 07b5f7bf
  Peter van 't Hof authored 9 years ago
  
  07b5f7bf
- Fixed small bug · 24205501
  Peter van 't Hof authored 9 years ago
  
  24205501
Nov 08, 2015
- Catch nullpointers · a1d89efc
  Peter van 't Hof authored 9 years ago
  
  a1d89efc
- Remove unused import · 869fb362
  Peter van 't Hof authored 9 years ago
  
  869fb362
- fix method name · 8c4f0b93
  Peter van 't Hof authored 9 years ago
  
  8c4f0b93
- Added more infor for deps files · fe2465f9
  Peter van 't Hof authored 9 years ago
  
  fe2465f9