Commits · 589d229b0ced3fb2859e32c46e9632008a188d6c · Mirrors / biopet.biopet

Feb 13, 2015
- Fix outputdirs · 589d229b
  Peter van 't Hof authored 10 years ago
  
  589d229b
- Added test log4j.properties · 64397750
  Peter van 't Hof authored 10 years ago
  
  64397750
Feb 12, 2015
- Remove unneeded "/" · 54eccd0a
  Peter van 't Hof authored 10 years ago
  
  54eccd0a
- Rename afterGraph to beforeGraph · e5e03434
  Peter van 't Hof authored 10 years ago
  
  e5e03434
- Change outputDir to File · 8ca365cb
  Peter van 't Hof authored 10 years ago
  
  8ca365cb
Feb 09, 2015
- Remove required from config calls · b8084935
  Peter van 't Hof authored 10 years ago
  
  b8084935
Feb 05, 2015
- Minor code refactor · b9f88a39
  Peter van 't Hof authored 10 years ago
  
  b9f88a39
- output name is now config value · 4842dd5c
  Peter van 't Hof authored 10 years ago
  
  4842dd5c
- Fix some options · c008141f
  Peter van 't Hof authored 10 years ago
  
  c008141f
Feb 04, 2015
- Added vcfstats to gatk pipeline · 5121ff20
  Peter van 't Hof authored 10 years ago
  
  5121ff20
Feb 03, 2015
- Change to option types · 71eb5183
  Peter van 't Hof authored 10 years ago
  
  71eb5183
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored 10 years ago
  
  ad0c55bc
- Name change · 29f9b30f
  Peter van 't Hof authored 10 years ago
  
  29f9b30f
- Implemented addMultisampleJobs method · 5f8a8375
  Peter van 't Hof authored 10 years ago
  
  5f8a8375
Jan 28, 2015
- Renaming values · 33f456b9
  Peter van 't Hof authored 10 years ago
  
  33f456b9
- Remove unused code · 413f0bd1
  Peter van 't Hof authored 10 years ago
  
  413f0bd1
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
Jan 27, 2015
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored 10 years ago
  
  91e72434
Jan 20, 2015
- Changing pipeline to improved multisampleQScript · 33e6ef14
  Peter van 't Hof authored 10 years ago
  
  33e6ef14
Jan 16, 2015
- Switch to config instead of sampleConfig and libraryConfig · 6c8f5376
  Peter van 't Hof authored 10 years ago
  
  6c8f5376
- Added sub path instead of submodule · 768d77cc
  Peter van 't Hof authored 10 years ago
  
  768d77cc
Jan 13, 2015
- Remove old pipeline, new tool replace this function · e37a0f80
  Peter van 't Hof authored 10 years ago
  
  e37a0f80
Jan 09, 2015
- Extended sample handing in multisample qscript · 091f86da
  Peter van 't Hof authored 10 years ago
  
  091f86da
Dec 09, 2014
- Change pom version · 06536548
  Peter van 't Hof authored 10 years ago
  
  06536548
- Unmask pipelines and tools · 74efe128
  Peter van 't Hof authored 10 years ago
  
  74efe128
- Change Pom to version 0.2.0 · 1572cb02
  Peter van 't Hof authored 10 years ago
  
  1572cb02
Dec 05, 2014
- Added License to header of all files · b2a02952
  Peter van 't Hof authored 10 years ago
  
  b2a02952
- Change Licenses · 41a81ab7
  Peter van 't Hof authored 10 years ago
  
  41a81ab7
Dec 04, 2014
- Mask oncompleted pipelines · 18936b56
  Peter van 't Hof authored 10 years ago
  
  18936b56
- Change pom to version 0.2.0-rc1 · 203b60cc
  Peter van 't Hof authored 10 years ago
  
  203b60cc
- No default limitation on variantcalling when target_bed is given · 09bf4a36
  Peter van 't Hof authored 10 years ago
  
  09bf4a36
Dec 02, 2014
- Fix bug on gubbins · d057ab01
  Peter van 't Hof authored 10 years ago
  
  d057ab01
- Fix bug on gubbins · fbdd632c
  Peter van 't Hof authored 10 years ago
  
  fbdd632c
- Changes in help screen GatkPipeline · 026b2015
  sajvanderzeeuw authored 10 years ago
  
  026b2015
- Fix bug on indel tree · 7e8cd038
  Peter van 't Hof authored 10 years ago
  
  7e8cd038
- Added snp + indels tree · 98db90f1
  Peter van 't Hof authored 10 years ago
  
  98db90f1
- fix bug on mpileup · 1b9ceb90
  Peter van 't Hof authored 10 years ago
  
  1b9ceb90
Dec 01, 2014
- Added gubbins to the pipeline · f35b7861
  Peter van 't Hof authored 10 years ago
  
  f35b7861
- Added protected license · 17319c63
  Peter van 't Hof authored 10 years ago
  
  17319c63
- Exclude public License from protected package · ac8326b8
  Peter van 't Hof authored 10 years ago
  
  ac8326b8