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091f86da

Commit 091f86da authored 10 years ago by Peter van 't Hof

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Extended sample handing in multisample qscript

parent 3230d5d4

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Changes 5

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protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala 2 additions, 2 deletions

...ala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala 50 additions, 1 deletion

...n/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/ToolCommand.scala 4 additions, 4 deletions

...src/main/scala/nl/lumc/sasc/biopet/core/ToolCommand.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/Configurable.scala 3 additions, 3 deletions

.../scala/nl/lumc/sasc/biopet/core/config/Configurable.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala 1 addition, 0 deletions

...rc/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala

with 60 additions and 10 deletions

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