Commits · 4fa85007da2254af28ecfd4f8872a86481359417 · Mirrors / biopet.biopet · GitLab

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Feb 08, 2016
- Added extra check for forcing abolute paths for input files · 4fa85007
  Peter van 't Hof authored Feb 8, 2016
  
  4fa85007
Feb 05, 2016
- Merge branch 'feature-qiime' into 'develop' · acbbc173
  Wai Yi Leung authored Feb 5, 2016
  acbbc173
- Style fixes · 6e62a69e
  Peter van 't Hof authored Feb 5, 2016
  
  6e62a69e
- Added testing for qiime biom to krona method · 60d0fb74
  Peter van 't Hof authored Feb 5, 2016
  
  60d0fb74
- Added testing for kraken to krona method · 6b8b3a37
  Peter van 't Hof authored Feb 5, 2016
  
  6b8b3a37
- Fixed tests · 768f5596
  Peter van 't Hof authored Feb 5, 2016
  
  768f5596
- Added documentation · 2bfef3ed
  Peter van 't Hof authored Feb 5, 2016
  
  2bfef3ed
Feb 04, 2016
- Added testing to gears pipeline · ff181760
  Peter van 't Hof authored Feb 4, 2016
  
  ff181760
- Added gears to multi mapping · 0ecd6778
  Peter van 't Hof authored Feb 4, 2016
  
  0ecd6778
- Added more methods to test · 95882d8e
  Peter van 't Hof authored Feb 4, 2016
  
  95882d8e
Feb 02, 2016
- Fixed bug in Ln · 53cc2a4d
  Peter van 't Hof authored Feb 2, 2016
  
  53cc2a4d
- Added md5 check to pipeline · f941cb35
  Peter van 't Hof authored Feb 2, 2016
  
  f941cb35
- Merge remote-tracking branch 'remotes/origin/develop' into feature-qiime · b81ad8bb
  Peter van 't Hof authored Feb 2, 2016
  
  b81ad8bb
Jan 27, 2016
- Merge branch 'feature-VarscanIntoShiva' into 'develop' · 52776123
  Wai Yi Leung authored Jan 27, 2016
  52776123
- Code improvement · 3427e4e1
  Peter van 't Hof authored Jan 27, 2016
  
  3427e4e1
Jan 25, 2016
- Skipped flexiprep stats when flexiprep is not executed · 800ad479
  Peter van 't Hof authored Jan 25, 2016
  
  800ad479
- Fixed bug in report · b2156b2c
  Peter van 't Hof authored Jan 25, 2016
  
  b2156b2c
- Merge remote-tracking branch 'remotes/origin/develop' into feature-VarscanIntoShiva · 88c9300a
  Peter van 't Hof authored Jan 25, 2016
  88c9300a
- Change version command · ae01e8be
  Peter van 't Hof authored Jan 25, 2016
  
  ae01e8be
Jan 20, 2016
- Fix compile issue · 8afdecfc
  Peter van 't Hof authored Jan 20, 2016
  
  8afdecfc
- Merge remote-tracking branch 'remotes/origin/develop' into feature-qiime · ae8146ba
  Peter van 't Hof authored Jan 20, 2016
  
  ae8146ba
- Merge branch 'fix-260' into 'develop' · 6714a0ab
  Peter van 't Hof authored Jan 20, 2016
  6714a0ab
- Fix bwa bug using freeVar=false · 42b5a991
  Wai Yi Leung authored Jan 20, 2016
  
  42b5a991
- Revert "PindelVCF wrapper", does not belong to this branch · bba51033
  Wai Yi Leung authored Jan 20, 2016
  bba51033
- PindelVCF wrapper · 2b618795
  Wai Yi Leung authored Jan 20, 2016
  
  2b618795
- Merge remote-tracking branch 'origin/feature-VarscanIntoShiva' into feature-VarscanIntoShiva · fcb1e2f5
  Sander van der Zeeuw authored Jan 20, 2016
  
  fcb1e2f5
- typo · 6073f6aa
  Sander van der Zeeuw authored Jan 20, 2016
  
  6073f6aa
Jan 19, 2016
- Merge branch 'fix-259' into 'develop' · 19323af6
  Wai Yi Leung authored Jan 19, 2016
  19323af6
- Fixed unit tests · 30696cab
  Peter van 't Hof authored Jan 19, 2016
  
  30696cab
- Added varscan_jar to test config · dd9a7060
  Peter van 't Hof authored Jan 19, 2016
  
  dd9a7060
- Raise default memory for varscan · 10835803
  Peter van 't Hof authored Jan 19, 2016
  
  10835803
- Added version to varscan · 3f85a446
  Peter van 't Hof authored Jan 19, 2016
  3f85a446
- Added version to varscan · a13b0d1d
  Peter van 't Hof authored Jan 19, 2016
  
  a13b0d1d
- Fixed error message in bamutils · 3fb6b5f8
  Peter van 't Hof authored Jan 19, 2016
  
  3fb6b5f8
- Fixed style · 8b099b94
  Peter van 't Hof authored Jan 19, 2016
  
  8b099b94
- Merge branch 'feature-update-cutadapt' into 'develop' · ac55539b
  Peter van 't Hof authored Jan 19, 2016
  ac55539b
- add varscan test to shiva variantcalling test · 86ad2593
  Sander van der Zeeuw authored Jan 19, 2016
  
  86ad2593
- move varscan wrapper to extensions · ca40d875
  Sander van der Zeeuw authored Jan 19, 2016
  
  ca40d875
- Update Cutadapt wrapper and style change (camelCaps instead of _) · 3049d572
  Wai Yi Leung authored Jan 19, 2016
  
  3049d572
Jan 18, 2016
- Update Cutadapt wrapper · 564081d7
  Wai Yi Leung authored Jan 18, 2016
  
  564081d7